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Table S1. Inter-population distances (km) between Helen's Bay, Bloody Bridge and Dublin Bay populations. For population codes, see Table 1.

Table S2. Allele-specific primers used to genotype six single nucleotide polymorphisms.

Table S3. Microsatellite primers used in the present study. N, number of alleles.

Table S4. Private alleles detected.

Table S5a. Analysis of molecular variance (AMOVA) based on six single nucleotide polymorphism loci.

Table S5b. Analysis of molecular variance (AMOVA) based on seven microsatellite loci.

Table S5c. Analysis of molecular variance (AMOVA) based on combined microsatellite and single nucleotide polymorphism data (13 loci).

Table S6a. Matrix of population-pairwise ΦST values based on six single nucleotide polymorphism loci (below diagonal) and seven microsatellite loci (above diagonal). Values in italics are not significantly different from zero.

Table S6b. Matrix of population-pairwise ΦST values based on combined single nucleotide polymorphism and microsatellite data (13 loci). Values in italics are not significantly different from zero.

Table S7. Results of assignment tests. Shaded cells represent populations from the same region.

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