Molecular phylogeny and evolution of the Perissodactyla
Article first published online: 25 NOV 2011
© 2011 The Linnean Society of London
Zoological Journal of the Linnean Society
Volume 163, Issue 4, pages 1289–1303, December 2011
How to Cite
STEINER, C. C. and RYDER, O. A. (2011), Molecular phylogeny and evolution of the Perissodactyla. Zoological Journal of the Linnean Society, 163: 1289–1303. doi: 10.1111/j.1096-3642.2011.00752.x
- Issue published online: 25 NOV 2011
- Article first published online: 25 NOV 2011
- Received 6 October 2010; revised 25 March 2011; accepted for publication 28 March 2011
Figure S1. Number of expected substitutions per site estimated in all perissodactyl families for the three genetic partitions: mitochondrial (black), nuclear coding (grey), and nuclear intronic (white). Values were obtained using PAUP* from patristic distances, considering three subsets of data that correspond to each perissodactyl family. A star on the phylogenetic tree indicates the highest support for all three approaches [bootstrap maximum parsimony (BPMP) = BP maximumlikelihood = 100%, posterior probability = 1.00].
Table S1. Likelihood ratio test performed on independent and concatenated genes of perissodactyls. Likelihood values for the best tree and the alternative tree (under the molecular clock assumption) are shown with the P-values. Significant differences are highlighted in bold.
Table S2. Genetic characterization of mitochondrial and nuclear genes. Parameters considered are: total sequence length, number and proportion of parsimony-informative characters (No. of sites, Var.), nucleotide frequencies (% A, C, G, T), relative nucleotide rate substitution (AG, TC, CA, AT, CG, GT), amongst-site rate heterogeneity (alpha parameter), proportion of invariable sites (Inv. sites), transition/transversion ratio (TI/TV), consistency index (CI), and saturation (S).
Appendix S1. List of primers used to amplify partial sequences of mitochondrial and nuclear genes.
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