Fig. S1. Algorithm of the computational pipeline.

Fig. S2. Read number distribution of all poly(A)-RNA data.

Fig. S3. Numbers of 1-, 2-, or 3-bp indels for the entire dataset.

Fig. S4. A CAG-deletion in the TP53 message in MEG-01s cells.

Table S1. Gene list for the custom cDNA-capture system.

Table S2. Purification of the target cDNA in CML cell lines.

Table S3. TP53 mutation status in CML cell lines.

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