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Fig. S1 Alignment of the active site defined by Ferrer et al. (1999) of chalcone synthase (CHS)-related enzymes from 11 species.

Fig. S2 Detailed phylogenetic tree of chalcone synthase (CHS)-related genes.

Fig. S3 Phylogenetic analysis of flavonoid 2-oxoglutarate-iron-dependent oxygenases.

Fig. S4 Hierarchical clustering analysis of expression patterns of flavonoid biosynthesis genes in microarray experiments involving exposure of rice to pathogens.

Fig. S5 Hierarchical clustering analysis of expression patterns of flavonoid biosynthesis genes in microarray experiments involving exposure of soybean to pathogens.

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