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References

  • Akçakaya H.R. & Root W. (2002) RAMAS metapop: Viability Analysis for Stage-Structured Metapopulations (Version 4.0) – Applied Biomathematics. Setauket, New York.
  • Alderson L. (2009) Breeds at risk: definition and measurement of factors which determine endangerment. Livestock Science 123, 237.
  • American Livestock Breeds Conservancy (2008) http://www.albc-usa.org/cpl/wtchlist.html accessed September 2008.
  • Aranguren-Mendez J., Jordana J. & Gomez M. (2008) Genetic conservation of five endangered Spanish donkey breeds. Journal of Animal Breeding and Genetics 119, 25663.
  • Belkhir K., Borsa P., Chikhi L., Raufaste N. & Bonhomme F. (1996-2004) genetix 4.05, Logiciel Sous Windows TM Pour la Génétique des Populations. Laboratoire Génome, Populations, Interactions, CNRS UMR 5171, Université de Montpellier II, Montpellier, France.
  • Bennewitz J. & Meuwissen T.H.E. (2005a) A novel method for the estimation of the relative importance of breeds in order to conserve the total genetic variance. Genetics Selection Evolution 37, 31537.
  • Bennewitz J. & Meuwissen T.H.E. (2005b) Estimation of extinction probabilities of five German cattle breeds by population viability analysis. Journal of Dairy Science 88, 294961.
  • Bennewitz J., Eding H., Ruane J. & Simianer H. (2007) Selection of breeds for conservation. In: Utilization and Conservation of Farm Animal Genetic Resources. (Ed. by K.Oldenbrook), pp. 13146. Wageningen Academic Publishers, Wageningen, the Netherlands.
  • Berthier P., Beaumont M.A., Cornuet J.-M. & Luikart G. (2002) Likelihood-based estimation of the effective population size using temporal changes in allele frequencies: a genealogical approach. Genetics 160, 74151.
  • Berthouly C., Bed’Hom B., Tixier-Boichard M., Chen C.F., Lee Y.P., Laloë D., Legros H., Verrier E. & Rognon X. (2008) Using molecular markers and multivariate methods to study the genetic diversity of local European and Asian chicken breeds. Animal Genetics 39, 1219.
  • Blackburn H.D. (2009) Genebank development for the conservation of livestock genetic resources in the United States of America. Livestock Science 120, 196203.
  • Boichard D. (2002) Pedig: a fortran package for pedigree analysis suited to large populations. 7th World Congress on Genetics Applied to Livestock Production 28, 13.
  • Caballero A. & Toro M.A. (2002) Analysis of genetic diversity for the management of conserved subdivided populations. Conservation Genetics 3, 28999.
  • Cañón J., Alexandrino P., Bessa I. et al. (2001) Genetic diversity measures of local European beef cattle breeds for conservation purposes. Genetics Selection Evolution 33, 31132.
  • Chevalet C., Nikolic N. & SanCristobal M. (2006) Effects of genetic drift and mutations on some measures of genetic diversity in livestock populations. 8th World Congress on Genetics Applied to Livestock Production 33, 7.
  • Cole J.B. (2007) PyPedal: a computer program for pedigree analysis. Computers and Electronics in Agriculture 57, 10713.
  • Derban S., Foulley J.L. & Ollivier L. (2002) weitzpro: A Software for Analysing Genetic Diversity. INRA, Paris.
  • Eding J.H. & Meuwissen T.H.E. (2001) Marker based estimates of between and within population kinships for the conservation of genetic diversity. Journal of Animal Breeding and Genetics 118, 14159.
  • Eding J.H., Crooijmans R.P.M.A., Groenen M.A.M. & Meuwissen T.H.E. (2002) Assessing the contribution of breeds to genetic diversity in conservation schemes. Genetics Selection Evolution 34, 61333.
  • European Cattle Genetic Diversity Consortium (2006) Marker-assisted conservation of European cattle breeds: an evaluation. Animal Genetics 37, 47581.
  • Fabuel E., Barragán C., Silió L., Rodríguez M.C. & Toro M.A. (2004) Analysis of genetic diversity and conservation priorities in Iberian pigs based on microsatellite markers. Heredity 93, 10413.
  • Falconer D.S. & Mackay T.F.C. (1996). Introduction to Quantitative Genetics, 4th edition. Pearson Education Group, Upper Saddle River, USA.
  • FAO. (2007a) The Global Plan of Action for Animal Genetic Resources and the Interlaken Declaration. FAO, Rome, Italy. ftp://ftp.fao.org/docrep/fao/010/a1404e/a1404e00.pdf .
  • FAO. (2007b) The State of the World’s Animal Genetic Resources for Food and Agriculture. FAO, Rome, Italy. http://www.fao.org/docrep/010/a1250e/a1250e00.htm .
  • Felsenstein J. (2005) phylip (Phylogeny Inference Package) Version 3.6. Distributed by the author. Department of Genome Sciences, University of Washington, Seattle, USA
  • Fernández J., Toro M.A. & Caballero A. (2008) Management of subdivided populations in conservation programs: development of a novel dynamic system. Genetics 179, 68392.
  • Frankel O.H. & Brown A.D.H. (1984) Current plant genetic resources – a critical appraisal. In: Genetics: New Frontiers (Ed. by J.H.W.Holden, J.T.Williams), IV, pp. 111. Oxford and IBH Publishing Co., New Delhi.
  • Gandini G.C. & Villa E. (2003) Analysis of the cultural value of local livestock breeds: a methodology. Journal of Animal Breeding and Genetics 120, 111.
  • Gandini G.C., Ollivier L., Danell B., Distl O., Georgoudis A., Groeneveld E., Martyniuk E., Van Arendonk J.A.M. & Wolliams J.A. (2004) Criteria to assess the degree of endangerment of livestock breeds in Europe. Livestock Production Science 91, 17382.
  • García D., Corral N. & Cañón J. (2005) Combining inter – and intrapopulation information with the Weitzman approach to diversity conservation. Journal of Heredity 96, 70412.
  • Gilligan D.M., Briscoe D.A. & Frankham R. (2005) Comparative losses of quantitative and molecular genetic variation in finite populations of Drosophila melanogaster. Genetical Research 85, 4755.
  • Gizaw S., Komen H., Windig J.J., Hanotte O. & Van Arendonk J.A.M. (2008) Conservation priorities for Ethiopian sheep breeds combining threat status, breed merits and contributions to genetic diversity. Genetics Selection Evolution 40, 43347.
  • Glowatzki-Mullis M., Muntwyler J., Bäumle E. & Gaillard C. (2008) Genetic diversity measures of Swiss goat breeds as decision-making support for conservation policy. Small Ruminant Research 74, 20211.
  • Goodman D. (1987) The demography of chance extinction. In: Viable Populations for Conservation. (Ed. by M.E.Soulé), Cambridge University Press, Cambridge, pp. 1134.
  • Goudet J. (1995) fstat (Version 1.2): a computer program to calculate F-statistics. Journal of Heredity 86, 4856.
  • Gutiérrez J.P. & Goyache F. (2005) A note on endog: a computer program for analysing pedigree information. Journal of Animal Breeding and Genetics 122, 1726.
  • Gutiérrez J.P., Royo L.J., Álvarez I. & Goyache F. (2005) MolKin v2.0: a computer program for genetic analysis of populations using molecular coancestry information. Journal of Heredity 96, 71821.
  • Hanotte O., Toll J. & Iñiguez L. & Rege E. (2005) Farm animal genetic resources: why and what do we need to conserve. In: Proceedings of Int. Workshop “Options and Strategies for the Conservation of Farm Animal Genetic Resources” (Ed. by J.Gibson, S.Gamage, O.Hanotte, L.Iñiguez, J.C.Maillard, B.Rischkowsky, D.Semambo & J.Toll), pp. 114, Montpellier, France.
  • Van Der Heide C.M., Van Den Bergh J.C.J.M. & Van Ierland E.C. (2005) Extending Weitzman’s economic ranking of biodiversity protection: combining ecological and genetic considerations. Ecological Economics 55, 21823.
  • Jombart T., Devillard S., Dufour A.B. & Pontier D. (2008) Revealing cryptic spatial patterns in genetic variability by a new multivariate method. Heredity 101, 92103.
  • Joseph L.N., Maloney R.F. & Possingham H.P. (2009) Optimal allocation of resources among threatened species: a project prioritization protocol. Conservation Biology 23, 32838.
  • Kalinowski S.T. (2005) hp-rare 1.0: a computer program for performing rarefaction on measures of allelic richness. Molecular Ecology Notes 5, 1879.
  • Lacy R.C. (1993) vortex: a computer simulation for use in population viability analysis. Wildlife Research 20, 4565.
  • Laval G., Iannuccelli N., Legault C. et al. (2000) Genetic diversity of eleven European pig breeds. Genetics Selection Evolution 32, 187203.
  • Meuwissen T.H.E. (2009) Towards consensus on how to measure neutral genetic diversity? Journal of Animal Breeding and Genetics 126, 3334.
  • Novembre J., Johnson T., Bryc K. et al. (2008) Genes mirror geography within Europe. Nature 456, 98101.
  • Oliehoek P.A., Windig J.J., Van Arendonk J.A.M. & Bijma P. (2006) Estimating relatedness between individuals in general populations with a focus on their use in conservation programs. Genetics 17, 48396.
  • Ollivier L. & Foulley J.L. (2005) Aggregate diversity: New approach combining within- and between-breed genetic diversity. Livestock Production Science 95, 24754.
  • Park S.D.E. (2001) Trypanotolerance in West African cattle and the population genetic effects of selection. Ph.D. thesis University of Dublin, Dublin, Ireland.
  • Peakall R. & Smouse P.E. (2006) genalex 6: genetic analysis in Excel. Population genetic software for teaching and research. Molecular Ecology Notes 6, 28895.
  • Pérez-Figueroa A., Saura M., Fernández J., Toro M.A. & Caballero A. (2009) metapop—a software for the management of subdivided populations in conservation programs. Conservation Genetics 10, 10979.
  • Petit R., El Mousadik A. & Pons O. (1998) Identifying populations for conservation on the basis of genetic markers. Conservation Biology 12, 84455.
  • Pinent T., Simianer H. & Weigend S. (2005) Weitzman’s approach and conservation of breed diversity: first application to German chicken breeds. In: The Role of Biotechnology for the Characterization and Conservation of Crop, Forestry, Animal and Fishery Genetic Resources. (Ed. by P.A.Marsan, S.Lanteri, L.Monti, A.R.Sonnino & F.Veronesi), pp. 2012. FAO and Fondazine per le Biotechnologie, Turin, Italy.
  • Piyasatian N. & Kinghorn B.P. (2003) Balancing genetic diversity, genetic merit and population viability in conservation programs. Journal of Animal Breeding and Genetics 120, 13749.
  • Plante Y., Vega-Pla J.L., Lucas Z., Colling D., De March B. & Buchanan F. (2007) Genetic diversity in a feral horse population from Sable Island, Canada. Journal of Heredity 98, 594602.
  • Possingham H.P. & Davies I. (1995) alex: a population viability analysis model for spatially structured populations. Biological Conservation 73, 14350.
  • Reist-Marti S.B., Simianer H., Gibson J., Hanotte O. & Rege J.E.O. (2003) Weitzman’s approach and conservation of breed diversity: an application to African breeds. Conservation Biology 17, 1299311.
  • Reist-Marti S.B., Abdulai A. & Simianer H. (2005) Conservation programs for African cattle: design, cost and benefits. Journal of Animal Breeding and Genetics 122, 95109.
  • Reist-Marti S.B., Abdulai A. & Simianer H. (2006) Optimum allocation of conservation funds and choice of conservation programs for a set of African cattle breeds. Genetics Selection Evolution 38, 99126.
  • Rousset F. (2008) genepop’007: a complete re-implementation of the genepop software for Windows and Linux. Molecular Ecology Resources 8, 1036.
  • Ruane J. (2000) A framework for prioritizing domestic animal breeds for conservation purposes at the national level: a Norwegian case study. Conservation Biology 14, 138595.
  • Sargolzaei M., Iwaisaki H. & Colleau J.J. (2006) CFC: a tool for monitoring genetic diversity. 8th World Congress on Genetics Applied to Livestock Production 27, 28.
  • Schneider S., Roessli D. & Excoffier L. (2000) arlequin: A Software for Population Genetics Data Analysis. Ver 2.000. Genetics and Biometry Lab, Dept. of Anthropology, University of Geneva. Switzerland.
  • Simianer H. (2002) Noah’s dilemma: which breeds to take aboard the ark? 8th World Congress on Genetics Applied to Livestock Production 26, 02.
  • Simianer H. (2005a) Decision making in livestock conservation. Ecological Economics 53, 55972.
  • Simianer H. (2005b) Using expected allele number as objective function to design between and within breed conservation of farm animal biodiversity. Journal of Animal Breeding and Genetics 122, 17787.
  • Simianer H. (2008) Accounting for non-independence of extinction probabilities in the derivation of conservation priorities based on Weitzman’s diversity concept. Conservation Genetics 9, 1719.
  • Simianer H., Marti S.B., Gibson J., Hanotte O. & Rege J.E.O. (2003) An approach to the optimal allocation of conservation funds to minimize loss of genetic diversity between livestock breeds. Ecological Economics 45, 37792.
  • Simon D.L. & Buchenauer D. (1993) Genetic Diversity of European Livestock Breeds. Wageningen Pers, Wageningen.
  • Solis A., Jugo B.M., Mériaux J.C., Iriondo M., Mazón L.I., Aguirre A.I., Vicario A. & Estomba A. (2005) Genetic diversity within and among four south European native horse breeds based on microsatellite DNA analysis: implications for conservation. Journal of Heredity 96, 6708.
  • Sonesson A.K., Grundy B., Woolliams J.A. & Mewuissen T.H.E. (2000) Selection with control of inbreeding in populations with overlapping generations: a comparison of methods. Animal Science 70, 18.
  • Takatsuka M. & Gahegan M. (2002) geovista studio: a codeless visual programming environment for geoscientific data analysis and visualization. Computers and Geosciences 28, 113144.
  • Tapio I., Värv S., Bennewitz J. et al. (2006) Prioritization for conservation of Northern European Cattle Breeds based on analysis of microsatellite data. Conservation Biology 20, 176879.
  • Toro M.A. (2008) Genetic distances: a useful tool to be applied with caution. Journal of Animal Breeding and Genetics 125, 34.
  • Toro M.A. & Caballero A. (2005) Characterisation and conservation of genetic diversity in subdivided populations. Philosophical Transcriptions of the Royal Society, Series B 360, 136778.
  • Tryon R.C. (1939). Cluster Analysis. McGraw-Hill. New York, USA.
  • Wang J. & Whitlock M.C. (2003) Estimating effective population size and migration rates from genetic samples over space and time. Genetics 163, 42946.
  • Weitzman M.L. (1992) On diversity. Quarterly Journal of Economics 107, 363405.
  • Weitzman M.L. (1993) What to preserve? An application of diversity theory to crane conservation. Quarterly Journal of Economics 108, 15783.
  • Weitzman M.L. (1998) The Noah’s ark problem. Econometrica 66, 127998.
  • Zander K.K. & Drucker A.G. (2008) Conserving what’s important: using choice model scenarios to value local cattle breeds in East Africa. Ecological Economics 68, 3445.
  • Zerabruk M., Bennewitz J., Kantanen J., Olsaker I. & Vangen O. (2007) Analysis of genetic diversity and conservation priorities for six north Ethiopian cattle breeds. Journal of Animal Breeding and Genetics 124, 23641.