• Open Access

Influenza H1N1 (swine flu) vaccination: a safety surveillance feasibility study using self-reporting of serious adverse events and pregnancy outcomes


  • Isla S. Mackenzie,

    Corresponding author
    1. Medicines Monitoring Unit (MEMO), Division of Medical Sciences, University of Dundee, Ninewells Hospital and Medical School, Dundee
      Dr Isla S Mackenzie, Medicines Monitoring Unit (MEMO), Level 7, Ninewells Hospital, University of Dundee, Dundee DD1 9SY, UK. Tel.: +44 13 8263 2575. Fax: +44 13 8274 0209. E-mail: i.s.mackenzie@dundee.ac.uk
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  • Thomas M. MacDonald,

    1. Medicines Monitoring Unit (MEMO), Division of Medical Sciences, University of Dundee, Ninewells Hospital and Medical School, Dundee
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  • Saad Shakir,

    1. Drug Safety Research Unit (DSRU), Bursledon Hall, Blundell Lane, Southampton, UK
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  • Moira Dryburgh,

    1. Medicines Monitoring Unit (MEMO), Division of Medical Sciences, University of Dundee, Ninewells Hospital and Medical School, Dundee
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  • Brian J. Mantay,

    1. Medicines Monitoring Unit (MEMO), Division of Medical Sciences, University of Dundee, Ninewells Hospital and Medical School, Dundee
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  • Patrick McDonnell,

    1. Medicines Monitoring Unit (MEMO), Division of Medical Sciences, University of Dundee, Ninewells Hospital and Medical School, Dundee
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  • Deborah Layton

    1. Drug Safety Research Unit (DSRU), Bursledon Hall, Blundell Lane, Southampton, UK
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Dr Isla S Mackenzie, Medicines Monitoring Unit (MEMO), Level 7, Ninewells Hospital, University of Dundee, Dundee DD1 9SY, UK. Tel.: +44 13 8263 2575. Fax: +44 13 8274 0209. E-mail: i.s.mackenzie@dundee.ac.uk



• While the new H1N1 vaccines underwent the usual rigorous safety and efficacy testing, concerns remained that there may be unexpected side effects of the vaccines.

• The strategy for H1N1 vaccine pharmacovigilance in the UK consisted of two patient studies by the two vaccine manufacturers, 14 small scale studies supported by the National Institute of Health Research, monitoring by specialist neurologists and the MHRA.

• There were calls to investigate the feasibility of a large-scale prospective active surveillance system for ‘near real-time’ vaccine safety monitoring that would be complementary to the other aforementioned initiatives.


• This pilot study demonstrated that collecting ‘near real-time’ reporting of event data from patients who experienced side effects as well as those who reported no problems after swine flu vaccination is feasible.

• The use of information technologies improves patient involvement in research as well as dramatically limiting the cost of the study.

• The online methodology facilitates rapid surveillance in response to urgent safety issues.


During the global H1N1 influenza A (swine flu) pandemic 2009–2010, swine flu vaccines were expeditiously licensed and a mass vaccination programme for high risk groups, including pregnant women, was introduced in the UK. This pilot active safety surveillance study was performed to establish the feasibility of rapidly monitoring the new swine flu vaccines in large patient numbers receiving or offered the vaccination under normal conditions of use within a short time frame.


A cohort design with safety data capture through modern technologies was carried out in Scotland, UK during the winter swine flu vaccination programme 2009–2010 in individuals receiving or offered the swine flu vaccination. The main outcome measures were self-reported serious adverse events (SAEs) and pregnancy outcomes.


The cohort comprised 4066 people; 3754 vaccinated and 312 offered the vaccination but not vaccinated. There were 939 self-reported events (838 different events), 53 judged to fit SAE criteria by the investigators, with nine judged as possibly, probably or definitely vaccine related. None of the seven deaths (six in vaccinees) were judged as vaccine related. One hundred and twenty-eight women reported 130 pregnancies during the study with 117 pregnant at study start. There were reports of four miscarriages in three women and six possible congenital abnormalities in live births.


Overall, no significant safety issues were identified. The methodology and use of modern technologies to collect safety data from large numbers of patients was successful and could be used again in similar safety studies.


In April 2009, the first cases of human influenza A (H1N1) (‘swine flu’) were identified in Mexico, Canada and the US [1]. The virus spread rapidly to other parts of the world and a global flu pandemic was declared in June 2009 by the World Health Organization (WHO). The rapid development of H1N1 vaccines to prevent further morbidity and mortality became a public health priority and the first vaccines were licensed in October 2009. A mass vaccination programme for high risk groups was introduced in the UK from late October 2009 onwards. In Scotland, the vaccination programme was launched on 21 October 2009. The people initially offered vaccination included frontline health and social care workers, people over 6 months and up to 65 years in the seasonal flu vaccine clinical at-risk groups (e.g. heart, lung, kidney disease), all pregnant women, household contacts of people with compromised immune systems and people aged 65 years and over in the existing seasonal flu vaccine clinical at-risk groups. In a second phase of the programme, young children aged over 6 months and up to 5 years of age were also prioritized for vaccination between December 2009 and March 2010 [2]. Around 500 000 people in Scotland were vaccinated against H1N1 influenza between November 2009 and April 2010 (>5 million in the UK) [3].

While the new H1N1 vaccines underwent the usual rigorous safety and efficacy testing [4–7], concerns remained that there may be unexpected side effects of the vaccines. This was partly based on the experiences from a 1976 US national immunization programme against a swine-origin influenza A virus (H1N1 subtype A/NJ/76) in which >40 million people were vaccinated [8, 9]. The programme was stopped early, partly due to the fact that the expected pandemic failed to materialize, but also due to the appearance of an apparent excess of cases of the neurological disorder, Guillain-Barre syndrome (GBS) in vaccinated individuals. GBS usually follows a viral infection, but can also rarely follow immunization in susceptible individuals [10]. The large scale of the 2009 worldwide vaccination programme prompted many countries to improve and expand their vaccination safety monitoring procedures [11].

The strategy for H1N1 vaccine pharmacovigilance in the UK consisted of two 9000 patient studies by the two vaccine manufacturers, the monitoring of GBS via neurologists within the Health Protection Agency (HPA), 14 small scale studies supported by the National Institute of Health Research (NIHR) on behalf of the Department of Health and safety monitoring by the Medicines and Healthcare products Regulatory Agency (MHRA) including a modified yellow card system and online reporting portal. In addition, we carried out an academic active safety surveillance study to monitor for serious adverse events in the population offered H1N1 vaccination in Scotland.

The aim of this study was to investigate the feasibility of a large scale prospective active surveillance system for ‘near real-time’ vaccine safety monitoring that would be complementary to the other aforementioned initiatives. Through the use of information technologies, exposure and outcome data would be collected directly from patients in Scotland during the mass vaccination programme in an expedited manner.

Specific objectives were (i) to recruit cohorts of people offered H1N1 influenza A vaccination: vaccinated and unvaccinated (unexposed) cohorts (those eligible for vaccination but who did not receive it), (ii) to examine the use and safety of H1N1 influenza A vaccination during the vaccination programme with particular interest in vaccine utilization characteristics for the whole vaccinated cohort and selected clinical risk groups (pregnant women, adults with selected underlying conditions, frontline health care workers), (iii) to capture patient self-reported events, (iv) to describe cases of serious adverse events (resulting in or prolonging hospital admission, life-threatening, fatal or resulting in significant or persisting disability) and relatedness to vaccination, (v) to describe pregnancy outcomes in vaccinated and non-vaccinated women and (vi) to pilot the feasibility of using patient self-reporting via questionnaires using largely electronic data capture to streamline data entry.


The study used an observational prospective cohort design consisting of an exposed (H1N1 vaccinated) population and unexposed (non-H1N1 vaccinated) reference group. Participants were those offered the swine flu vaccination as part of the government directed strategy in Scotland. Patients were invited to participate in the study when attending swine flu vaccination centres within primary care and other HPA/NHS designated sites in Scotland. Study information was sent out to all 1015 general practices in Scotland and around one third of these practices took part by making information available to their patients. Participants were alerted to the study at the time of attendance for vaccination via leaflets and posters displayed at the vaccination site. Participants were given an information sheet about the study and directed to a bespoke study website (http://www.safetyswineflu.org–now closed) for further information. A freephone telephone enquiry line was also available to answer questions about the study. Written informed consent was collected from patients, either at the time of vaccination, or via an online form. Patients were included in the study if they provided consent to a) participate in the study and b) allow follow-up of any adverse events from healthcare professionals and their medical records if necessary.

H1N1 exposure data and outcome data were gathered directly from study participants. Participants completed baseline information about themselves on a paper or online registration form including demographics, information about risk group, e.g. healthcare worker, underlying medical conditions, vaccination site, e.g. GP surgery and date of vaccination. For non-vaccinated individuals, reasons for not having the vaccine were collected.

Participants were followed up at monthly intervals following the date of first vaccination, or if unvaccinated, following the date of registration (‘index date’). Participants were contacted via their preferred mode of contact on a monthly basis after the index date, using automated technology to generate messages by email or text (via Ja.net®) where possible, or otherwise by letter or telephone, and asked to respond to report in their own words any serious adverse events requiring emergency treatment and/or resulting in hospitalization since being offered vaccination (primary study outcome), irrespective of whether they felt the event was related to the vaccine. Other information relating to minor events was not requested. If they had no events, a simple ‘No’ response was required. If the participant did not respond, a reminder message was sent. If no response was received after the reminder, alternative contact methods were tried or a nominated proxy, where provided, was contacted. Since entry into the cohort was staggered, the observation time for each individual varied. Figure 1 shows participant flow and response rate during the study. Each patient was followed up for each month post recruitment irrespective of response (or not) to the previous month's follow-up request.

Figure 1.

Flow diagram of participants and follow-up rates during the study

All data provided on the baseline questionnaire and at each monthly follow-up (where a response was provided) were entered onto the study database. All positive monthly follow-up reports were reviewed by two members of the research team and patient verbatim reported event data were also coded onto the database using the Drug Safety Research Unit (DSRU) Event Dictionary which is a hierarchical dictionary arranged in a system-organ classification where groups associated ‘Doctor Summary’ terms (terminology used by the prescribing physician) under ‘Lower Level’ event terms (LLT), similarly, related LLT are grouped under a broader ‘Higher Level’ event term. Serious adverse events were followed up by contacting the patient, their proxy, their general practitioner or consulting medical records for more information. Any reported pregnancies were specifically followed up to delivery date or to the end of pregnancy to ascertain the outcome of pregnancy.

The study started on 2 November 2009 and closed to new recruitment on 30 April 2010, when the 2009–2010 vaccination programme had largely ended. Follow-up of the last pregnancy outcomes was completed in January 2011.

The study was conducted in accordance with the principles of Good Clinical Practice (GCP) and received expedited favourable ethical opinion from the Fife and Forth Valley Ethics Committee and NHS R + D approvals. Initially, only adults (≥16 years) were recruited but later children were also included after additional regulatory approvals were obtained.

Data analysis included calculation of cumulative weekly participation rates (vaccinated and unvaccinated cohorts), examination of patient characteristics using descriptive statistics and univariate analysis [crude Odds Ratios (OR) with 95% confidence intervals (CI)]. Counts of events reported by participants were summarized by body system organ class. Overall event incidence densities for the 7 month observation period from the start of the vaccination programme were calculated, the numerator being the first report of event (at lower level term) and the denominator patient months of observation, censored at month of last response to follow-up. Patients for whom no response was provided to any follow-up were excluded from the denominator. Self-reported events of interest were then reviewed by two members of the clinical research team and adjudicated by study clinicians (with training in making seriousness (in accordance with the International Conference on Harmonization definitions [12]) and relatedness assessments on events) and relatedness to vaccination [the four categories used were: definite, probable, possible and not related (unlikely)][13, 14]). Confirmed serious adverse events are presented within a case series matrix.



Four thousand and sixty-six patients gave valid consent and entered the study. Figure 2 shows the pattern of recruitment of participants to the study cohort between November 2009 and April 2010, according to vaccination status. Fifty percent of the cohort was recruited by the fourth week of the study. Where place of vaccine was reported in vaccinated participants (n= 3624), vaccination took place most commonly in GP surgeries (83.1%, n= 3012) followed by the workplace (including health and social care workers vaccinated in hospitals) (10.2%, n= 371) and other settings (6.9%, n= 251).

Figure 2.

Recruitment of participants to the study cohort shown by date and vaccination status. Had H1N1 vaccine (inline image); declined H1N1 vaccine (inline image)

Baseline characteristics

The mean (±SD) age of all participants was 53.6 ± 17.0 years; 4028 participants were aged ≥16 years (mean 53.2 ± 17.5 years and 38 participants were children aged <16 years [median 4.8 years (IQR 2.3–8.1)]. Data on the adult (≥16 years) and children (<16 years) groups are presented separately.

Adult participants (aged ≥16 years)

The baseline characteristics of the adult participants are presented in Table 1. More than half of participants were female (57.2%). Male participants were significantly older than females [males (n= 1660) mean age 57.9 ± 15.9 years; females (n= 2284) mean age 50.4 ± 17.2 years; (P < 0.001)]; 3708 (92.2%) participants were vaccinated. The mean time from start of study (2 November 2009) to vaccine uptake was 26.5 ± 16.3 days. The proportion of participants who did not receive the H1N1 vaccine was small (7.8%, n= 312).

Table 1.  Baseline characteristics of participants aged ≥ 16 years, (significant OR in bold)
Had H1N1 vaccineYes (n= 3716)No (n= 312)Total (n= 4028)POR (95% CI)
  1. Percent given of prognostic variable where response provided. **Where only positive response provided, percent given of adult cohort (thus missing assumed ‘No’)’. †excluding pregnancy.

Gender (Female)2157 (58.7%)148 (47.9%)2305 (57.9)P < 0.00011.55 (1.22, 1.97)
Age at consent (years):     
 Mean (SD)53.6 (16.9)54.4 (17.9)53.6 (17.0)P= 0.8016 
 Missing  32  
Caregiver247 (7.3)18 (6.6)265 (7.3)P= 0.6541.12 (0.68, 1.95)
 Missing  384  
Healthcare professional614 (17.4)27 (9.4)641 (16.8)P= 0.0012.03 (1.35, 3.17)
Past history vaccination in prior 3 months**     
 Seasonal flu vaccine1998 (53.8)134 (43.0)2132 (53.0)P < 0.00011.55 (1.22,1.97)
 Travel vaccine42 (1.1)1 (0.3)43 (1.1)P= 0.1813.56(0.60, 144.12)
 Other vaccine128 (3.4)6 (1.9)134 (3.3)P= 0.1501.82 (0.80,5.09)
 Any one or more vaccinations in prior 3 months2068 (55.6)137 (43.9)2205 (54.8)P < 0.00011.60 (1.26, 2.04)
Type of concurrent vaccination on same day, if vaccinated**:     
 Seasonal flu469 (12.6%)NA469 (12.6%)NANA
 Other17 (0.5%) 16 (0.5%)  
Medical conditions**     
 Asthma886 (23.8)83 (26.6)969 (24.1)P= 0.2720.86 (0.66, 1.14)
 Diabetes630 (17.0)61 (19.6)691 (17.2)P= 0.2420.84 (0.62, 1.14)
 Heart disease565 (15.2)54 (17.3)619 (15.4)P= 0.3210.86 (0.63, 1.19)
 Kidney disease55 (1.5)10 (3.2)65 (1.6)P= 0.0200.45 (0.23, 1.00)
 Liver disease42 (1.1)6 (1.9)48 (1.2)P= 0.2150.58 (0.24, 1.70)
 Blood disorder77 (2.1)6 (1.9)83 (2.1)P= 0.8591.08 (0.47, 3.06)
 Immunosuppression217 (5.9)10 (3.2)227 (5.6)P= 0.0531.87 (0.98, 4.00)
 Other condition458 (12.3)22 (7.1)480 (11.9)P= 0.0061.85 (1.18, 3.04)
 One or more reported medical condition of interest2457 (66.1)207 (66.4)2664 (66.1)P= 0.9300.99 (0.77, 1.27)
Pregnant at consent (n, % of females)104 (7.5)13 (12.5)117 (10.7)P= 0.0650.57 (0.30, 1.14)
 Missing (female any age)  810  
Other regular medication2966 (81.5%)247 (83.2%)3213 (81.6)P= 0.5250.89 (0.64, 1.23)
 Missing  91  
Had flu since April 2009537 (14.7)59 (19.5)597 (14.9)P= 0.0240.71 (0.53, 0.98)
 Missing  69  

Factors affecting uptake of vaccination

Simple exploratory univariate analysis of data stratified by H1N1 vaccination status was conducted to look for associations between patient baseline characteristics and uptake of H1N1 vaccination (Table 1). Those participants who had the vaccine were significantly more likely to be female (OR 1.6, 95% CI 1.2, 2.0), health professionals (OR 2.0, 95% CI 1.4, 3.2), to have received one or more vaccines in the prior 3 months (OR 1.6, 95% CI 1.2, 2.0) (mainly seasonal flu vaccination) and to have medical conditions other than those specified within the vaccination programme target groups (OR 1.9, 95% CI 1.2, 3.0). Sixteen patients reported that they had previously been medically diagnosed with swine flu.

Non-vaccinated cohort: Reasons for not having H1N1 vaccine

Of the 312 patients who decided not to have the H1N1 vaccination, 142 reasons were provided (Table 2). Of these, the most frequent reason cited for non-vaccination was ‘considering having it later’ (13.5%).

Table 2.  Patients aged ≥16 years: Reasons given for not having vaccination in non-vaccinated cohort (n= 312)
Reasons for not having H1N1 vaccinationn (% of non-vaccinated subgroup)
  1. Patients could provide more than one reason.

Consider having it later42 (13.5%)
Other reason35 (11.2%)
Worried about side effects25 (8.1%)
Think they are at low risk13 (4.2%)
Advised not to10 (3.2%)
Would rather have flu9 (2.9%)
Needlephobic8 (2.6%)
Total reasons given142

Child and adolescent participants (aged < 16 years)

All 38 children who participated in the study received the H1N1 vaccination (Table 3). Consent/assent was given by the parent or guardian (and also by the child if old enough to understand the study). Numbers of participants were small as further ethical and R & D approvals were required prior to including children in the study and by the time these were obtained, the vaccination of children had already been largely completed in many parts of Scotland. The majority of this group of participants were female (56.7%, n= 21). The median age was 4.8 years (IQR 2.3–8.1), with participants aged <4 years of age being the most represented, the youngest child being 6 months of age. The most frequent medical condition reported was asthma (26.3%, n= 10).

Table 3.  Patients aged < 16 years: characteristics on consent (all had H1N1 vaccine)
Characteristicsn (%) ; n= 38
  • *

    Missing assumed ‘No’.

Gender (Female)21 (56.7)
Age at consent (years): 
 Up to but not including 523 (60.5)
 Between 5 and 9 (inclusive)9 (23.7)
 Between 10 and 15 (inclusive)6 (15.8)
 Median (IQR)4.8 (2.3, 8.1)
Place where vaccinated 
 GP surgery37 (97.3)
 Parent's workplace1 (2.6)
 Other0 (0)
Past history of vaccination in prior 3 months* 
 Seasonal flu vaccine5 (13.2)
 Travel vaccine1 (2.6)
 Other vaccine3 (7.9)
 Any one or more vaccinations in prior 3 months9 (23.7)
 Concurrent vaccination given same day*: 
  Seasonal flu6 (15.8)
Medical conditions* 
 Asthma10 (26.3)
 Other condition3 (7.9)
 One or more reported medical conditions of interest13 (32.4)
Other regular medication12 (32.4)

Self-reported events

There were 939 self-reported events (838 different events once duplicates were removed, 827 in the 7 month observation period. The remaining 11 events occurred in the eighth and ninth month after index date and were all related to pregnancies. Overall follow-up response rates to at least one follow-up request over the 7 month observation period for the H1N1 vaccinated and unvaccinated cohorts were 81.0% and 73.1%, respectively, which were significantly different (Chi2 d.f.1, P < 0.001). The most commonly reported clinical events (other than pregnancies and births which were prompted outcomes, hospital referrals and tests) in H1N1 vaccinated subjects were chest infection (n= 53; 2.9 cases per 1000 patient months' follow-up), coryza (n= 24, 1.3 cases per 1000 patient months' follow-up) and malaise (n= 21, 1.2 cases per 1000 patient months' follow-up). Pregnancy and congenital abnormalities data are presented separately later. The most frequently self-reported events are presented in Table 4. There were 38 self-reported incident events reported by unvaccinated subjects, the most frequent of which were also chest infection (n= 5, 4.0 cases per 1000 patient months' follow-up) and coryza (n= 2, 1.6 cases per 1000 patient months' follow-up). There were no events reported for the children (aged < 16 years). All self-reported events were reviewed by the investigators and where necessary further information was obtained from the patient, their proxy, healthcare professionals or from medical records.

Table 4.  Most frequently self-reported clinical incident events in 7 month study observation period, ranked by total count, by vaccine exposure cohort
Incident eventsFollow-up period (month after vaccinated or offered vaccination)
1234567TotalNumber per 1000 patient months of follow-up
  • *

    Patient verbatim term given as ‘heart problems’.

Received H1N1 vaccine
 Chest infection10141410500532.91
 Flu like symptoms2321310120.66
 Pain in limb3141100100.55
 Chest pain111220070.38
 Viral infection020310060.33
Did not receive H1N1 vaccine
 Chest infection040010053.98
 Asthma worse000100010.80
 Carcinoma stomach010000010.80
 Cardiac failure010000010.80
 Cardiovascular system unspecified*001000010.80

Serious adverse events

After review by study investigators, 53 of the 838 self-reported events (6.4%) met the protocol definition for serious adverse event (SAE) i.e. resulting in or prolonging hospital admission, life-threatening, fatal or resulting in significant or persisting disability (NB, pregnancy events were counted and reported separately, see later). Of the 53 SAEs, nine were assessed as possibly, probably or definitely related to vaccination (Table 5). One event was judged as probably related to vaccination (neurological symptoms within 1 day of vaccination), and one as definitely related to vaccination (local skin reaction developing into possible cellulitis at vaccination site starting 6 days after vaccination). There were seven deaths (one of which was in the non-vaccinated cohort), none of which were judged to be related to vaccination (Table 6). These deaths were due to underlying conditions (e.g. cancer), exacerbations of pre-existing chronic conditions and in one case, consequences of a fall, and the causes of death would not be unexpected in the age groups in which the deaths occurred. In some cases, the underlying condition leading to death may have been the reason why the patient was offered vaccination. Of note, those patients offered vaccination are by definition in higher risk groups than the general population so one might expect higher event rates in the vaccinated population.

Table 5.  Serious adverse events judged to be possibly, probably or definitely related to vaccination (i.e. serious adverse reactions)
Patient gender/age (years)Follow-up period event reportedReceived H1N1 vaccineTime from vaccination to onset of symptoms (days)Patient self report of symptomsDuration of symptoms (days)Patient sought medical attentionDiagnosisTreatment receivedSymptoms ResolvedOngoing TreatmentPossible alternative causesRelatedness
  1. NS = not specified

M/462Y7Flu like symptoms 5 days. Admitted to hospital, shortness of breath and productive cough, flushed and sweating5Y (Hospital doctor)Lower respiratory tract infectionAntibioticsYNViral infectionPossibly
F/622Y53Facial droopOngoing at follow-upY (GP)Bell's palsySteroidsNNNSPossibly
F/592Y12Epileptic seizure, post-seizure paralysis in right arm and leg for 2 days. Had past history of epilepsy5Y (Hospital doctor)Epileptic seizureMedication NSYYNSPossibly
F/711Y14Severe headaches, admitted to hospital with suspected meningitis. No meningitis found. Diagnosis- chronic migrainesNSY (Hospital doctor)Chronic migrainesNSNSNSNSPossibly
M/391Y1Pins and needles and numbness in hands, feet, legs and arms. Pins and needles and numbness left side of head, tongue, nose and lips, muscle weakness, poor co-ordination, lack of sleep, slurred speech, dizzy, light headed spells, migraines, extreme tiredness.NSY (Hospital doctor)Seen by neurologist- suggested nerve fibre damageNSNSNSNSProbably
F/381Y2Swelling at injection site, painful and hard. Felt unwell, flu like symptoms. Had three seizures. Admitted to hospital, no history of previous seizures. Had CT scan – normal. Patient had allergy to eggs. Suffered muscular damage during seizures – causing severe back pain.Ongoing at follow-upY (Hospital doctor)Epileptic seizuresNSNSNSAllergy to eggsPossibly
F/482Y32Chronic fatigue, dizzy turnsOngoing at follow-upY (GP)? Anaemia/ problem with thyroxine concentrationsMedication NSNYUnknownPossibly
M/572Y2Pulmonary embolism37 daysY (Hospital doctor)Pulmonary embolusMedication NSYYHad hernia repair prior to immunisation.Possibly
F/561Y6Skin inflamed and red, area spreading, then developed white itchy spots in same area18 daysY (Hospital Dr)Local reaction to vaccineAntibioticsYNVaccineDefinitely
Table 6.  Deaths
Age (years)SexHad H1N1 VaccineH1N1 Vaccination date (month/year)Cause of deathDate of death (month/year)SAERelatedness assessment
77FYes11/2009Lung cancer08/2010YesUnrelated
75FYes11/2009Heart failure, post-operative complications after fractured femur08/2010YesUnrelated
65FYes12/2009Myocardial infarction01/2010YesUnrelated
61FYes11/2009Lung infection (longstanding COPD)03/2010YesUnrelated
60FYes12/2009Metastatic cancer03/2010YesUnrelated
75FYes12/2009Lung cancer02/2010YesUnrelated
70MNoN/ASepsis (had valvular heart disease, gastric adenocarcinoma, COPD and cardiovascular disease)11/2010YesUnrelated


One hundred and twenty-eight women reported pregnancy either at the time of entry to the study or later during the study period. Two women reported two pregnancies each (total of 130 pregnancies). All women reporting pregnancies were followed up where possible. The response rate was 75.8% (97/128). Two women self-reported events unrelated to pregnancy (respiratory infection with sleep disturbance and abdominal pain with gastroenteritis in month 1 and 2, respectively). These were not judged to be serious. The outcomes of the pregnancies (n= 130) are given in Table 7, stratified by vaccination status. Trimester of pregnancy at vaccination could not be established for two women. Of the remaining 126 women, 13 were vaccinated before their last menstrual period, 100 received the vaccination during their pregnancy and 13 were not vaccinated.

Table 7.  Outcomes of 130 confirmed pregnancies in 128 women*
 Delivery typeNo replySpontaneous miscarriageTotal
Normal birth (Possible congenital abnormalities)Caesarean sectionForceps delivery
  • *

    Two women were reported to have two pregnancies; one woman reported miscarriages in both pregnancies, the other woman reported one miscarriage, then upon follow-up reported a second early pregnancy, but no further details were available on the outcome of the second pregnancy.

Exposed to H1N1 vaccine
 Injection before last menstrual period5 (Hypospadias [n= 1])303213 (9.3%)
 Injection given in 1st trimester9 (Skin tag on finger [n= 1])224219 (14.7%)
 Injection given in 2nd trimester27 (Down's syndrome [n= 1]); (Hydrocephalus [n= 1]); (Umbilical hernia [n= 1]); (Cleft palate [n= 1])12410053 (45.0%)
 Injection given in 3rd trimester18408030 (24.0%)
 Exposure uncertain000202 (7.0%)
Not exposed to H1N1 vaccine
 Not vaccinated7312013 (10.0%)
Total66 (6)247294 
Live births:9733130

Live births were reported for 97 women for whom trimester stage upon vaccination was known. There were six reported potentially congenital abnormalities (one report each of hypospadias, Down's syndrome, hydrocephalus, umbilical hernia, cleft palate and skin tag on finger) in six live offspring of six vaccinated women. No potentially congenital abnormalities or other adverse outcomes were reported in the 13 live offspring of the 13 unvaccinated women. There were no reported stillbirths, but four spontaneous miscarriages reported by three (vaccinated) women during the study period. There was no further information available on the outcome of the remaining 29 pregnancies.


The results of this study indicate that a large-scale prospective active surveillance system for ‘near real-time’ vaccine safety monitoring that would be complementary to other initiatives is feasible. Through the use of information technologies, the study was relatively novel in that patients could enrol for the study and securely enter their data online, which improves patient involvement in research as well as dramatically limiting the cost of the study. The online methodology also allowed the study to be set up very quickly in response to the urgent nature of the introduction of the vaccination programme at a time when the pandemic proportions could not yet be predicted. The study was done without any specific external funding. The predominant material costs were the printing of patient information sheets and advertising posters that were sent to GP surgeries.

One advantage of our study design was that it was prospective in nature and it encouraged ‘near real-time’ reporting of event data from patients who experienced no problems after swine flu vaccination, as well as from those experiencing side effects, unlike many other reporting systems that only collect data on affected individuals. Since outcome data were collected at monthly intervals after consent for participation was given, bias introduced by over-reporting from patients who may have participated because they experienced an event was likely to be minimal. We also recruited a group of non-vaccinated individuals who had been offered vaccination but had decided not to have it, as a comparator group, although this group eventually only comprised less than 10% of the total study population. Overall, we recruited approximately 1% of the vaccinated population in Scotland to this study. There was good representation of patients from GP practices throughout Scotland, so we have no reason to believe that the study cohort is not representative of the general Scottish population for whom vaccination was indicated. However, we did not collect the characteristics of individuals offered vaccination who did not participate in the study. Another advantage of our study was that we were able to recruit and follow up a cohort of pregnant women, one of the target groups for vaccination, and also ascertain the outcomes of births in these women as well as those who became pregnant shortly after receiving the vaccine.

Limitations of the study included an incomplete response rate to follow-up requests, some difficulties contacting patients where contact details had been incorrectly completed at time of registration, e.g. incorrect e-mail addresses and no other contact details provided, and the fact that only around one third of general practices in Scotland were able to make our study information available to their patients attending for vaccination (mainly due to timing and workload concerns) [15]. We were also not able to distinguish between patients receiving the two available types of vaccination in the UK [Celvapan® (Baxter) and Pandemrix® (GSK)], although it is known that Pandemrix® was much more widely used than Celvapan®during the vaccination programme. We only asked participants to report what they considered to be serious (requiring urgent medical attention) reactions to the vaccine, to allow us to concentrate on capturing more important adverse reactions. Thus minor local side effects and minor systemic reactions are by design likely to be under-reported and recorded, with the additional possibility of differential reporting between exposed and unexposed groups. Data on children were limited because additional approvals to extend the study to include children aged 16 years or less were only obtained towards the end of the study period (February 2010) and any forms received from children who tried to register earlier in the study had to be discarded until the appropriate approvals were in place.

The results of this study support those of most other studies on the safety of swine flu vaccination [16, 17] and the results of the MHRA yellow card system surveillance programme suggesting that overall, H1N1 vaccination is safe [3]. Ascertaining accurate background rates of events in any population is difficult [11, 18, 19] and we acknowledge that this study is unable to inform on excess risk attributable to use of the vaccine, in addition to those risks likely as a result of complex morbidities seen in target vaccination groups, particularly since the number of unexposed participants was low. There were no confirmed cases of GBS in this study, which was one of the main concerns regarding similar influenza vaccinations in the past, although one patient developed widespread neurological symptoms thought to be a form of generalized nerve damage within hours of vaccination. We also had no reported cases of narcolepsy. Narcolepsy was identified as a possible risk of H1N1 vaccination (Pandemrix®) in Scandinavian countries and the possible link is currently undergoing further investigation although at present no causal relationship has been established [20]. The six deaths that occurred in vaccinated patients in this study were due to other factors and were judged to be unrelated to vaccination.

There were four miscarriages within the population of 128 women reporting 130 pregnancies in this study (incidence of 3.1%). Miscarriage is recognized to occur in up to 15% of confirmed pregnancies [21], although often remains unrecognized or unreported. The incidence observed in our study was well within the expected incidence in the population. Of the six reported possible congenital abnormalities in neonates born to the pregnant women taking part in the study (all of whom received the H1N1 vaccine), some of these were minor (e.g. umbilical hernia and skin tag on finger) and occur commonly, but all are reported for completeness. There was no pattern of any one type of congenital abnormality that occurred in more than one neonate.

With more time for preparation, more broad inclusion criteria to include special populations such as children earlier, more publicity and funding for recruitment advertising, and if rolled out to the entire UK population (approximately 55 million) rather than limited to Scotland (approximately 5.5 million) we could use this study methodology again to recruit much larger numbers of patients with high quality data at a reasonable research cost.

In conclusion, no significant safety issues were identified in patients exposed to H1N1 influenza A vaccination in this study. The use of web-based technology in the study was successful in reducing costs and allowing the collection of high quality data directly from patients. This method for near ‘real-time’ monitoring, with minimal additional workload for healthcare staff, should be considered as an additional pharmacovigilance tool for other safety studies.

Competing Interests

There are no competing interests to declare.


We would like to thank the patients and health professionals who participated in this study and acknowledge the contributions of the following people to early discussions about this study: Professor Sir Lewis D Ritchie OBE Centre of Academic Primary Care (University of Aberdeen), Professor Helen Smith, Head of Division of Public Health and Primary Care, Chair of Primary Care, Director of Student Support (University of Brighton), Professor Richard Martin, Professor of Clinical Epidemiology, Department of Social Medicine (University of Bristol), Professor Munir Pirmohamed, NHS Chair of Pharmacogenetics, Deputy Director, MRC Centre for Drug Safety Science, Department of Pharmacology (University of Liverpool), Professor Jonathan Van-Tam, Professor of Health Protection and Professor Tony Avery, Professor in Primary Care, Institute of Clinical Research (University of Nottingham), Professor C.P. Farrington (Open University), Dr Claire Doe, Clinical Research Fellow, Dr Victoria Cornelius, Statistician and Mr Shayne Freemantle (DSRU) and Dr Daniel Rutherford, Clinical Trials Physician and General Practitioner (University of Dundee).