A large kindred with X-linked neutropenia with an I294T mutation of the Wiskott-Aldrich syndrome gene

Authors


Peter Vandenberghe, Centre for Human Genetics, University Hospital Leuven, Herestraat 49, 3000 Leuven, Belgium.
E-mail: peter.vandenberghe@med.kuleuven.be

Summary

X-linked neutropenia (XLN, OMIM #300299) is a rare form of severe congenital neutropenia. It was originally described in a three-generation family with five affected members that had an L270P mutation in the GTP-ase binding domain (GBD) of the Wiskott-Aldrich syndrome protein (WASP) [Devriendt et al (2001) Nature Genetics, Vol. 27, 313–317]. Here, we report and describe a large three-generation family with XLN, with 10 affected males and eight female carriers. A c.882T>C mutation was identified in the WAS gene, resulting in an I294T mutation. The infectious course is variable and mild in view of the profound neutropenia. In addition to the original description, low-normal IgA levels, low to low-normal platelet counts and reduced natural killer (NK)-cell counts also appear as consistent XLN features. However, inverted CD4/CD8 ratios were not found in this family, nor were cases identified with myelodysplastic syndrome or acute myeloid leukaemia. Female carriers exhibited a variable attenuated phenotype. Like L270P WASP, I294T WASP is constitutively active towards actin polymerization. In conclusion, this largest XLN kindred identified to date provides new independent genetic evidence that mutations disrupting the auto-inhibitory GBD of WASP are the cause of XLN. Reduced NK cells, low to low normal platelet counts and low to low-normal IgA levels are also features of XLN.

X-linked neutropenia (XLN, OMIM #300299), which results from an L270P mutation in exon 9 of WAS, was first described in a Belgian kindred (Devriendt et al, 2001). Since then, only two isolated cases with a comparable phenotype have been described, one with an I294T and one with an S272P WAS mutation (Ancliff et al, 2006). We have recently identified a large Irish kindred with neutropenia and an X-linked pattern of inheritance that demonstrated a WAS I294T mutation in 18 family members. In fact, this family had previously been reported in 1988, with severe neutropenia, recurrent bacterial infections, monocytopenia, a maturation delay in the promyelocyte/metamyelocyte stage, a reduced CD4/CD8 ratio in 4/8 patients and low IgA (Cryan et al, 1988). We here report detailed clinical, haematological, immunological and genetic data from this pedigree. In addition, the functional consequences of the I294T WAS mutation were studied.

Material and methods

Mutational screening

DNA was extracted from peripheral blood using the High Pure polymerase chain reaction (PCR) Template Preparation kit (Roche Diagnostics GmbH, Basel, Switzerland). Exon 9 of WAS was amplified using primers exon9 F 5′-tgtctcctcgccttattcctc-3′ and exon9 R 5′-ggtgctcccataaggactga-3′ (GeneAmp PCR system 2400; Applied Biosystems, Foster City, CA, USA). PCR products were verified with 6% polyacrylamide gel electrophresis and sequenced in both directions, using BigDye® Terminator v3·1 Cycle Sequencing Kit (Applied Biosystems). Sequencing results were analysed using Sequence Scanner (Applied Biosystems).

Flow cytometry

Peripheral blood samples were collected in sodium ethylenediamine tetraacetic acid (EDTA). Cells were immunostained with flurorescein isothiocyanate (FITC), phycoerythrin (PE), peridinin chlorophyll (PerCP) and allophycocyanin (APC) conjugated monoclonal antibodies: anti-CD3, anti-CD4, anti-CD8, anti-CD19, anti-CD16/56, anti-CD45. Red cells were lysed with FacsLyse (Becton Dickinson Immunocytometry Systems, Erembodegem, Belgium) in a lyse-no wash procedure and analysed on a FACSCalibur flow cytometer (Becton Dickinson Immunocytometry Systems). Analysis of the data was performed with multitest (Becton Dickinson Immunocytometry Systems) software. Lymphocyte subsets were identified with the following antibody panels: B-cells (CD3−/CD19+), helper T-cells (CD3+/CD4+), cytotoxic T-cells (CD3+/CD8+), and natural killer (NK) cells (CD3−/CD16+56+).

X-chromosome inactivation study

Leucocytes were isolated from peripheral blood by density centrifugation over Polymorphprep (Axis-Shield, Oslo, Norway). Leucocytes were immunostained with anti-CD3, anti-CD19, anti-CD16 and anti-CD14. T-lymphocytes, B-lymphocytes, polymorphonuclear cells and monocytes respectively were sorted on a FACSvantage (Becton Dickinson Immunocytometry Systems). DNA was extracted from the sorted fractions and from mouth swabs, as previously described (Delforge et al, 1998). Half of the sample was digested overnight in the presence of the methylation-specific restriction enzyme HpaII, digesting only unmethylated DNA and leaving the methylated inactive allele untouched. The second half of the sample was incubated without restriction enzymes. PCR was performed as previously described and fragment length was analysed using Genescan 500 ROX Size standard and genescan computer program (both from Applied Biosystems) (Delforge et al, 1998). For each sample, a corrected ratio (Cr) was calculated. A cell fraction was considered skewed (i.e. asymmetrically inactivated) if the expression of one allele exceeded 75%, corresponding to Cr <0·3 or >3 (Busque et al, 1996).

Biochemistry

To test the activity of I294T WASP in vitro, a truncated WASP construct GBD-VCA [containing WASP residues 230–310-(GGS)2-420-501], GBD-VCA I294T mutant, VCA (WASP residues 420–501), actin, and Arp2/3 complexes were generated.

Circular dichroism spectra (222 nm) were obtained on 10 μmol/l samples in 25 mmol/l phosphate (pH 7), 150 mmol/l NaCl, and 1 mmol/l dithiothreitol (DTT). Melting temperatures were determined by the first derivative of the curve. Actin polymerization assays were performed by measuring the increase in pyrene fluorescence, as previously described. Briefly, pyrene fluorescence at 407 nm (excitation wavelength: 365 nm) was monitored over time. Polymerization assays were performed in KMEI buffer [50 mmol/l KCl, 1 mmol/l MgCl2, 10 mmol/l ethylene glycol tetraacetic acid (EGTA), 10 mmol/l imidazole (pH 7)] and contained 4 μmol/l actin (6% pyrene), 10 nmol/l bovine Arp2/3 complex, and 500 nmol/l WASP protein (Devriendt et al, 2001).

Results

The clinical, haematological and immunological phenotype of XLN

DNA from the index case (Patient II.20 in the pedigree), a young man with severe neutropenia and a family history of neutropenia, was analysed for mutations in exon 9 of WAS. A c.882T>C mutation was identified (according to den Dunnen & Antonarakis, 2000), resulting in an I294T substitution in the GBD of WASP. Subsequently, we screened 60 family members (27 males and 33 females) for this mutation and identified 10 affected males (age 7–45 years) and eight female carriers (age 8–61 years) (Tables I and II; Fig 1). Variable neutropenia was observed in eight out of 10 affected males but, surprisingly, Patients II.4 and III.26 had a normal neutrophil count in the absence of granulocyte colony-stimulating factor (G-CSF) support (Table I). Tables SI and SII show consecutive and stable values in Patients III.10 and III.26. Affected individuals showed considerable variation in infectious history, and the severity of neutropenia did not seem to correlate closely with the susceptibility to infections. Patients I.6, II.14, II.16 and II.20 have taken G-CSF intermittently because of frequent upper respiratory tract infections (URTI), most frequently bronchitis and otitis, requiring antibiotics several times per year. One patient had pneumonia and one patient suffered bronchiolitis and chronic ear infections as a child. Patients II.14 and II.16 continue to have recurrent URTI’s as adults (8–10 times a year). Patients II.26 and II.27 are clinically well, without evidence of infections, despite profound neutropenia and in the absence of growth factor support. In addition, two male family members, with a history of recurrent infections, one of whom was neutropenic, died, aged 5 and 18 years, from meningitis and infectious colitis respectively.

Table I.   Haematological and immunological parameters in affected males.
PatientI.6II.4II.14II.15II.16II.20II.26II.27 III.10† III.26†Normal adult range
  1. †For the two paediatric cases, follow-up analyses are available in Tables SI and SII.

  2. ‡Data represent single random values, obtained on the same day for all cases. Values outside the normal range (2·5–97·5% percentile) are bolded.

Age (years)453234333223181687 
Leucocytes (×109/l)‡1·75·12·842·31·72·134·65·24·0–11
Neutrophils (×109/l)0·42·41·00·10·50·50·20·52·03·32·0–7·0
Monocytes (×109/l)0·40·40·11·20·10·10·10·10·30·40·2–1·8
Eosinophils (×109/l)0·00·10·20·10·00·00·20·20·10·10·02–0·5
Platelets (×109/l)13314214913716813113396279184150–400
Lymphocytes (×109/l)0·72·21·42·61·51·11·62·22·01·41·0–3·0
T-cells (CD3+) (×109/l)0·691·621·152·291·420·881·251·861·570·960·90–1·70
CD4+ (×109/l)0·200·840·571·340·750·520·640·960·950·510·70–1·10
CD8+ (×109/l)0·490·780·650·940·620·340·680·800·690·460·50–0·90
CD4/CD8 ratio0·41·070·891·431·211·530·941·191·371·130·57–2·77
B-cells (×109/l)0·0750·420·170·410·150·210·270·320·560·300·20–0·40
NK-cells (×109/l)0·020·050·040·040·050·020·020·060·040·030·20–0·40
IgA (g/l)0·561·321·061·80·920·590·531·490·890·290·80–2·80
Table II.   Haematological and immunological parameters in female carriers.
PatientI.1I.2I.3I.7II.5II.9II.25 III.17†Normal adult range
  1. NS, not skewed.

  2. †The normal range for these paediatric cases was obtained from (Bain, 1995).

  3. ‡Data represent single random values. Values outside the normal range (2·5–97·5% percentile) are bolded.

Age (years)615956363127278 
Leucocytes (×109/l)‡3·64·13·74·8644·52·54·0–11
Neutrophils (×109/l)1·51·81·91·53·92·12·41·72·0–7·0
Monocytes (×109/l)0·20·20·20·30·50·20·40·10·2–1·8
Eosinophils (×109/l)0·00·00·10·10·10·10·2ND0·02–0·5
Platelets (×109/l)135144136121193168158215150–400
Lymphocytes (×109/l)1·92·11·52·91·51·51·51·41·0–3·0
T-cells (CD3+) (×109/l)1·491·471·352·381·111·161·110·510·90–1·70
CD4+ (×109/l)0·900·970·761·640·690·550·570·290·70–1·10
CD8+ (×109/l)0·590·540·610·780·400·580·520·190·50–0·90
CD4/CD8 ratio1·531·811·262·11·740·951·091·570·57–2·77
B-cells (×109/l)0·260·320·240·420·360·300·340·140·20–0·40
NK cells (×109/l)0·120·170·070·060·150·120·090·090·20–0·40
IgA (g/l)1·451·541·490·771·351·721·270·380·80–2·80
X-chromosome inactivationNSNSNSNSSkewedSkewedNSNS 
Figure 1.

 Pedigree showing all 60 screened individuals, from I.1 till III.26: affected males (black squares), carrier females (filled circles) and unaffected family members (unfilled symbols).

Five of 10 affected males in the I294T family had monocytopenia. I294T mutant cases also had low or low-normal numbers of lymphocytes. Among the lymphocyte subsets, the CD3-/CD16+56+ NK cell subset was most strikingly decreased, consistent with the report of Ancliff et al (2006). This feature, although not reported originally (Devriendt et al, 2001), was also present in the original L270P family (P. Vandenberghe, unpublished observation). Absolute B-lymphocyte counts were decreased in all ten affected males. The absolute numbers of CD4+ T-helper cells and of CD8+ cytotoxic T-cells were decreased in seven out of ten and five out of ten patients, respectively. In contrast to the original XLN family and two cases recently described (Ancliff et al, 2006), an inverted CD4/CD8 ratio was not a feature in this family. The cytopenias within the lymphocyte subsets resulted in decreased absolute lymphocyte numbers in five out of 10 I294T cases and low-normal lymphocyte numbers in the remaining ones.

Mildly reduced platelet counts (seven males) and low-normal platelet counts (two males) were seen in nine of the 10 affected males. The mean platelet volume was normal. Finally, the mean IgA level in affected adult males was 1·034 g/l, significantly lower than in adult unmutated members (2·013 g/l) (P = 0·0020) (Fig 2), although for most of them the serum IgA remained within the lower end of the normal range (0·80–2·8 g/l). IgA levels in two of three tested XLN patients with the L270P mutation were also decreased (P. Vandenberghe, unpublished observation). Therefore, low-normal IgA levels also appear a feature of XLN.

Figure 2.

 Mean IgA levels in g/l for male XLN patients (n = 10), I294T carriers (n = 8) and unaffected family members (n = 23). P-value for IgA is 0·002 as calculated by the Mann–Whitney test comparing adult affected cases with unaffected family members.

Bone marrow aspirates, marrow biopsies and cytogenetics that had been carried out on five of the affected males, reportedly did not reveal evidence of or evidence of cytogenetic abnormalities. Of note, female carriers showed intermediate findings with low-normal neutrophil and platelet counts (Table II). NK cell counts were higher than in affected males, but still below the normal range. Patient II.25 required frequent antibiotics as a child and has used G-CSF intermittently in the past. Patient I.1 suffers from recurrent mouth ulcers and individual II.5 has frequent herpes labialis infections. Patient I.7 was frequently admitted for URTI’s as a child. Female carriers showed intermediate values for IgA (Fig 2).

Biochemical findings

The c.882T>C mutation in exon 9 of WAS results in an I294T mutation. In order to examine the functional effects of the I294T mutation, the I294 mutation was incorporated into a GBD-VCA construct. Similar to an L270P GBD-VCA construct, the I294T GBD-VCA construct has a reduced melting temperature (36°C), as measured by circular dichroism spectroscopy (78°C for wild-type) (Fig 3). Finally, we investigated the activity of the I294T GBD-VCA construct towards actin polymerisation. As shown in Fig 4, the I294T GBD-VCA construct was almost completely active towards the Arp2/3 complex (comparable to free VCA domain), in the absence of Cdc42, the Rho-GTPase that is the physiological activator of WASP.

Figure 3.

 Thermal denaturation of wild type GBD-VCA and GBD-VCA I294T by circular dichroism (CD) spectroscopy. CD measurements (222 nm) were obtained on 10 μmol/l samples in 25 mmol/l phosphate (pH 7), 150 mmol/l NaCl, and 1 mmol/l DTT, as described in Materials and methods.

Figure 4.

 Pyrene actin polymerization assays show that GBD-VCA I294T display Cdc42-independent activation. Pyrene fluorescence at 407 nm (excitation wavelength 365 nm) was monitored over time, as described in Materials and methods. Control: 4 μmol/l actin (6% pyrene), 10 nmol/l bovine Arp2/3 complex. Five-hundred nmol/l VCA, 500 nmol/l GBD-VCA or 500 nmol/l GBD-VCA I294T were added as indicated.

X-chromosome inactivation studies in carrier females

The Human Androgen Receptor Assay (HUMARA) was used to investigate X-chromosome inactivation patterns in peripheral blood leucocyte subsets in female carriers. This method is based on methylation-sensitive digestion of the polymorphic Human Androgen Receptor gene on Xcen-q13. Epithelial cells from mouth swabs were used to obtain the constitutional lyonisation pattern in tissues not expressing WASP.

In the L270P family, asymmetrical X-chromosome inactivation of unfractionated peripheral blood leucocytes was previously found in female carriers, supporting selection against L270P WASP in hematopoietic development. In addition, Ancliff et al (2006) also reported asymmetrical X-chromosome inactivation in carriers of I294T and S272P WASP. However, in the present I294T family, asymmetrical X-inactivation could not be demonstrated in haematopoietic cells of four out of six tested carriers. In Patient II.9, the X-inactivation pattern was skewed with preferential inactivation of the mutant WAS allele in PMN cells, but not in the other fractions. In Patient II.5, PMN, monocytes and T-cells, but not the buccal swabs, exhibited asymmetrical X-inactivation leading to inactivation of the chromosome with wild type WAS. Thus, no consistent pattern of asymmetrical X-inactivation was identified.

Discussion

In 2001, we described X-linked neutropenia as a new syndrome of neutropenia caused by a gain-of-function type mutation of the WAS gene (Devriendt et al, 2001). Since then, two additional isolated cases have been described, one with an I294T mutation and a second with an S272P mutation (Ancliff et al, 2006). We here report a large family with XLN, in which the I294T mutation was identified. This family had previously been described in the literature as ‘a large kindred with congenital neutropenia and low serum immunoglobulin A’ (Cryan et al, 1988). This largest XLN kindred reported to date allowed us to describe the clinical, hematological and immunological phenotype of XLN in more detail.

Chronic neutropenia and monocytopenia are confirmed as prominent features of XLN, although some cases have values that fall within the low-normal range. This leads to a variable infectious phenotype that is not distinctive and overall clinically mild in view of the depth of neutropenia. The rate of infections does not correlate closely with the neutrophil count. Therefore, it seems reasonable to reserve the use of G-CSF for severe infections, so as to avoid the long-term risks of chronic G-CSF administration (Germeshausen et al, 2007). The large number of affected males in this three-generation family enabled us to identify several, more subtle features of the phenotype of XLN. For instance, NK cell numbers, B-lymphocyte counts, platelet counts and levels of serum IgA were all subnormal or in the low-normal range. Importantly, the normal mean platelet volume enabled X-linked neutropenia to be distinguished from X-linked thrombocytopenia, the attenuated phenotype of Wiskott-Aldrich syndrome with microplatelets. In contrast with 3/3 evaluated cases with L270P XLN, and two recently described cases with I294T and S272P XLN, an inverted CD4/CD8 ratio or elevated peripheral CD3+/CD8+ cell counts were not found in this family. Additional recent testing of patients IV.1 and IV.3 with L270P XLN did not reveal an inverted CD4/CD8 cell ratio either (P. Vandenberghe, unpublished observation). Therefore, an inverted CD4/CD8 ratio does not seem an essential presenting feature of XLN. However, there was a tendency for decreased numbers of CD3+CD4+ helper T-cells, while the levels of CD3+CD8+ cytotoxic T-cells were better preserved.

The infectious pattern in XLN patients is not suggestive of a deficiency in T-cell mediated immunity. An elaborate immunological study was not performed in this family, although we attempted T-cell stimulation assays on frozen samples of six XLN patients (data not shown). The recovery and condition of thawed cells was satisfactory for further testing only in patient II.4. There was no clear deficit in T-cell production of cytokines in this patient, consistent with our previous findings in the L270P family. A possible explanation for the difference with classic Wiskott-Aldrich syndrome could be that only a truncated or absent WASP protein leads to deficient T-cell immunity. In contrast, full length WASP, albeit mutated as in XLN or XLT, may remain compatible with the preservation of a largely normal B- and T-cell function.

The results of the thermal dissociation and actin-polymerisation studies enabled us to conclude that the I294T WAS mutation affects the normal function of WASP by a mechanism similar to L270P: that is, substitution of the non-polar isoleucine in position 294 by a hydrophilic threonine leads to disruption of the hydrophobic fold, loss of the auto-inhibited structure of inactive WASP and constitutive availability of the carboxy-terminal VCA-segment for actin-polymerisation.

Recent studies have partly elucidated the pathogenesis of neutropenia in XLN: I294T WASP causes hyperactivation and delocalisation of actin polymerisation, genomic instability and increased apoptosis (Moulding et al, 2007). This could fit with the diagnosis of myelodysplastic syndrome (MDS) in one case (Ancliff et al, 2006), and an eventual evolution towards MDS and acute myeloid leukaemia in two cases in the L270P family (Beel et al, 2006). However, in the present kindred, no cases of MDS or leukaemia have occurred and the available bone marrow and cytogenetic examinations did not reveal evidence for myelodysplasia or other myeloid malignancies.

X-chromosome inactivation studies, performed on sorted leucocyte populations from female I294T carriers of this family, did not reveal a consistent asymmetrical X-inactivation pattern. This was unexpected as previous studies on unfractionated leucocytes in the L270P family had shown asymmetrical X-inactivation in 2/2 tested carrier females (Devriendt et al, 2001). In addition, three carriers with S272P and one carrier with I294T WAS also displayed asymmetrical X-inactivation in haematological cells (Ancliff et al, 2006). These seemingly conflicting results could reflect that activating mutations in the GBD of WASP do not provide a sufficiently strong signal to consistently result in skewed X-chromosome inactivation. Indeed, carriers of XLT may have random X-inactivation in haematological cells, while carriers of inactivating WAS mutations, leading to Wiskott-Aldrich syndrome, uniformly show non-random inactivation of the X-chromosome harbouring mutant WAS (Puck et al, 1990; De Saint-Basile et al, 1991; De Saint Basile et al, 1996). Alternatively, Carrel and Willard (2005) have recently shown that WAS belongs to the small proportion of genes that can be variably expressed from the inactivated X-chromosome, which could also explain the lack of skewing in hematopoietic cells of this family and the mild neutropenia that is observed in carrier females. Finally, other background genetic factors may contribute to determine the ratio of X-chromosome inactivation (Puck & Willard, 1998).

In conclusion, the data from this large pedigree with the WAS I294T mutation provide important, new and independent genetic evidence that mutations disrupting the auto-inhibitory GBD domain of WASP are the cause of XLN. Clinically, the severity of the neutropenia in I294T XLN does not seem to translate into an extreme susceptibility to infections. NK cell numbers, platelets and IgA levels in XLN are consistently below normal or in the low-normal range. There is a tendency for decreased numbers of CD4, but a reversed CD4/CD8 ratio’, as previously described (Devriendt et al, 2001; Ancliff et al, 2006), does not seem to be invariably present. Unexpectedly for an X-linked disease, female carriers of XLN have intermediate neutrophil, NK cell and platelet numbers and intermediate levels of IgA. To date, no affected members of this family have developed malignancies of myelopoiesis. However, as most affected males are younger than in the Belgian family, it is advisable that they are followed up closely. In particular long term G-CSF usage may predispose to CSF3R mutations, and this is highly predictive for malignant transformation (Germeshausen et al, 2007). Therefore, it might be reasonable to limit the use of G-CSF to episodes of severe infection and chronic use to merely correct neutrophil count should be discouraged. Finally, further investigation is needed to reveal how L270P and I294T WASP mutations lead to XLN.

Acknowledgements

The authors thank the patients and their families for participating in this study. Particular thanks go to Amanda Kiely in OLCH Dublin for assisting with the documentation and administration; to Liz O’Sullivan AMNCH Dublin for pulling charts and supplying laboratory records, and to Diarmaid O’Donghaile, Amy Lee Chong and Raveen Shahdadpuri for phlebotomy assistance. The authors thank Prof. Dr J. Ceuppens and L. Coorevits for T-cell activation assays. This study was supported by a research grant from FWO Vlaanderen to PV and the US National Institutes of Health (R01-56322 to MKR). KB is an aspirant researcher and PV is a senior clinical investigator of FWO Vlaanderen. This text presents research results of the Belgian programme of Interuniversity Poles of attraction initiated by the Belgian State, Prime Minister’s Office, Science Policy Programming. The scientific responsibility is assumed by the authors.

Author contributions

KB designed and performed the experimental work, analysed and interpreted the data and wrote the article, MC discovered the family and contributed clinical and haematological data, JB, JB, GL, SR, OPS and FG contributed haematological and laboratory data. VV offered expertise in flow cytometry, MKR and DWL designed and performed WASP activation studies, PV designed the study, analysed and interpreted the data and wrote the paper.

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