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  • Anderson, K., Lutz, C., van Delft, F.W., Bateman, C.M., Guo, Y., Colman, S.M., Kempski, H., Moorman, A.V., Titley, I., Swansbury, J., Kearney, L., Enver, T. & Greaves, M. (2011) Genetic variegation of clonal architecture and propagating cells in leukaemia. Nature, 469, 356361.
  • van Delft, F.W., Horsley, S., Colman, S., Anderson, K., Bateman, C., Kempski, H., Zuna, J., Eckert, C., Saha, V., Kearney, L., Ford, A. & Greaves, M. (2011) Clonal origins of relapse in ETV6-RUNX1 acute lymphoblastic leukemia. Blood, 117, 62476254.
  • Desper, R., Jiang, F., Kallioniemi, O.P., Moch, H., Papadimitriou, C.H. & Schaffer, A.A. (1999) Inferring tree models for oncogenesis from comparative genome hybridization data. Journal of Computational Biology, 6, 3751.
  • Di, X., Matsuzaki, H., Webster, T.A., Hubbell, E., Liu, G., Dong, S., Bartell, D., Huang, J., Chiles, R., Yang, G., Shen, M.M., Kulp, D., Kennedy, G.C., Mei, R., Jones, K.W. & Cawley, S. (2005) Dynamic model based algorithms for screening and genotyping over 100 K SNPs on oligonucleotide microarrays. Bioinformatics, 21, 19581963.
  • Dweep, H., Sticht, C., Pandey, P. & Gretz, N. (2011) miRWalk–database: prediction of possible miRNA binding sites by “walking” the genes of three genomes. Journal of Biomedical Informatics, 44, 839847.
  • Fischer, M., Schwieger, M., Horn, S., Niebuhr, B., Ford, A., Roscher, S., Bergholz, U., Greaves, M., Lohler, J. & Stocking, C. (2005) Defining the oncogenic function of the TEL/AML1 (ETV6/RUNX1) fusion protein in a mouse model. Oncogene, 24, 75797591.
  • Forestier, E., Andersen, M.K., Autio, K., Blennow, E., Borgstrom, G., Golovleva, I., Heim, S., Heinonen, K., Hovland, R., Johannsson, J.H., Kerndrup, G., Nordgren, A., Rosenquist, R., Swolin, B. & Johansson, B. (2007) Cytogenetic patterns in ETV6/RUNX1-positive pediatric B-cell precursor acute lymphoblastic leukemia: a Nordic series of 245 cases and review of the literature. Genes, Chromosomes and Cancer, 46, 440450.
  • Forestier, E., Heyman, M., Andersen, M.K., Autio, K., Blennow, E., Borgstrom, G., Golovleva, I., Heim, S., Heinonen, K., Hovland, R., Johannsson, J.H., Kerndrup, G., Nordgren, A., Rosenquist, R., Swolin, B. & Johansson, B. (2008) Outcome of ETV6/RUNX1-positive childhood acute lymphoblastic leukaemia in the NOPHO-ALL-1992 protocol: frequent late relapses but good overall survival. British Journal of Haematology, 140, 665672.
  • Greaves, M. (2006) Infection, immune responses and the aetiology of childhood leukaemia. Nature Reviews Cancer, 6, 193203.
  • Griffiths-Jones, S. (2010) miRBase: microRNA sequences and annotation. Current Protocols in Bioinformatics, 29, 12.9.112.9.10.
  • Hjalgrim, L.L., Madsen, H.O., Melbye, M., Jorgensen, P., Christiansen, M., Andersen, M.T., Pallisgaard, N., Hokland, P., Clausen, N., Ryder, L.P., Schmiegelow, K. & Hjalgrim, H. (2002) Presence of clone-specific markers at birth in children with acute lymphoblastic leukaemia. British Journal of Cancer, 87, 994999.
  • Hjalgrim, L.L., Rostgaard, K., Schmiegelow, K., Soderhall, S., Kolmannskog, S., Vettenranta, K., Kristinsson, J., Clausen, N., Melbye, M., Hjalgrim, H. & Gustafsson, G. (2003) Age- and sex-specific incidence of childhood leukemia by immunophenotype in the Nordic countries. Journal of the National Cancer Institute, 95, 15391544.
  • Hong, D., Gupta, R., Ancliff, P., Atzberger, A., Brown, J., Soneji, S., Green, J., Colman, S., Piacibello, W., Buckle, V., Tsuzuki, S., Greaves, M. & Enver, T. (2008) Initiating and cancer-propagating cells in TEL-AML1-associated childhood leukemia. Science, 319, 336339.
  • Kawamata, N., Ogawa, S., Zimmermann, M., Kato, M., Sanada, M., Hemminki, K., Yamatomo, G., Nannya, Y., Koehler, R., Flohr, T., Miller, C.W., Harbott, J., Ludwig, W.D., Stanulla, M., Schrappe, M., Bartram, C.R. & Koeffler, H.P. (2008) Molecular allelokaryotyping of pediatric acute lymphoblastic leukemias by high-resolution single nucleotide polymorphism oligonucleotide genomic microarray. Blood, 111, 776784.
  • Kristensen, T.D., Wesenberg, F., Jonsson, O.G., Carlsen, N.T., Forestier, E., Kirchhoff, M., Lundsteen, C. & Schmiegelow, K. (2003) High-resolution comparative genomic hybridisation yields a high detection rate of chromosomal aberrations in childhood acute lymphoblastic leukaemia. European Journal of Haematology, 70, 363372.
  • Krzywinski, M., Schein, J., Birol, I., Connors, J., Gascoyne, R., Horsman, D., Jones, S.J. & Marra, M.A. (2009) Circos: an information aesthetic for comparative genomics. Genome Research, 19, 16391645.
  • Lage, K., Karlberg, E.O., Storling, Z.M., Olason, P.I., Pedersen, A.G., Rigina, O., Hinsby, A.M., Tumer, Z., Pociot, F., Tommerup, N., Moreau, Y. & Brunak, S. (2007) A human phenome-interactome network of protein complexes implicated in genetic disorders. Nature Biotechnology, 25, 309316.
  • Lausten-Thomsen, U., Madsen, H.O., Vestergaard, T.R., Hjalgrim, H., Nersting, J. & Schmiegelow, K. (2011) Prevalence of t(12;21)[ETV6-RUNX1]-positive cells in healthy neonates. Blood, 117, 186189.
  • Lilljebjorn, H., Heidenblad, M., Nilsson, B., Lassen, C., Horvat, A., Heldrup, J., Behrendtz, M., Johansson, B., Andersson, A. & Fioretos, T. (2007) Combined high-resolution array-based comparative genomic hybridization and expression profiling of ETV6/RUNX1-positive acute lymphoblastic leukemias reveal a high incidence of cryptic Xq duplications and identify several putative target genes within the commonly gained region. Leukemia, 21, 21372144.
  • Lilljebjorn, H., Soneson, C., Andersson, A., Heldrup, J., Behrendtz, M., Kawamata, N., Ogawa, S., Koeffler, H.P., Mitelman, F., Johansson, B., Fontes, M. & Fioretos, T. (2010) The correlation pattern of acquired copy number changes in 164 ETV6/RUNX1-positive childhood acute lymphoblastic leukemias. Human Molecular Genetics, 19, 31503158.
  • Mori, H., Colman, S.M., Xiao, Z., Ford, A.M., Healy, L.E., Donaldson, C., Hows, J.M., Navarrete, C. & Greaves, M. (2002) Chromosome translocations and covert leukemic clones are generated during normal fetal development. Proceedings of the National Academy of Sciences USA, 99, 82428247.
  • Mullighan, C.G., Goorha, S., Radtke, I., Miller, C.B., Coustan-Smith, E., Dalton, J.D., Girtman, K., Mathew, S., Ma, J., Pounds, S.B., Su, X., Pui, C.H., Relling, M.V., Evans, W.E., Shurtleff, S.A. & Downing, J.R. (2007) Genome-wide analysis of genetic alterations in acute lymphoblastic leukaemia. Nature, 446, 758764.
  • Mullighan, C.G., Miller, C.B., Radtke, I., Phillips, L.A., Dalton, J., Ma, J., White, D., Hughes, T.P., Le Beau, M.M., Pui, C.H., Relling, M.V., Shurtleff, S.A. & Downing, J.R. (2008) BCR-ABL1 lymphoblastic leukaemia is characterized by the deletion of Ikaros. Nature, 453, 110114.
  • Parker, H., An, Q., Barber, K., Case, M., Davies, T., Konn, Z., Stewart, A., Wright, S., Griffiths, M., Ross, F.M., Moorman, A.V., Hall, A.G., Irving, J.A., Harrison, C.J. & Strefford, J.C. (2008) The complex genomic profile of ETV6-RUNX1 positive acute lymphoblastic leukemia highlights a recurrent deletion of TBL1XR1. Genes, Chromosomes and Cancer, 47, 11181125.
  • Pique-Regi, R., Caceres, A. & Gonzalez, J.R. (2010) R-Gada: a fast and flexible pipeline for copy number analysis in association studies. BMC Bioinformatics, 11, 380.
  • Schmiegelow, K., Forestier, E., Hellebostad, M., Heyman, M., Kristinsson, J., Soderhall, S. & Taskinen, M. (2010) Long-term results of NOPHO ALL-92 and ALL-2000 studies of childhood acute lymphoblastic leukemia. Leukemia, 24, 345354.
  • Shurtleff, S.A., Buijs, A., Behm, F.G., Rubnitz, J.E., Raimondi, S.C., Hancock, M.L., Chan, G.C., Pui, C.H., Grosveld, G. & Downing, J.R. (1995) TEL/AML1 fusion resulting from a cryptic t(12;21) is the most common genetic lesion in pediatric ALL and defines a subgroup of patients with an excellent prognosis. Leukemia, 9, 19851989.
  • Szabo, A. & Boucher, K. (2002) Estimating an oncogenetic tree when false negatives and positives are present. Mathematical Biosciences, 176, 219236.
  • Wiemels, J.L., Cazzaniga, G., Daniotti, M., Eden, O.B., Addison, G.M., Masera, G., Saha, V., Biondi, A. & Greaves, M.F. (1999) Prenatal origin of acute lymphoblastic leukaemia in children. Lancet, 354, 14991503.
  • Xiao, F., Zuo, Z., Cai, G., Kang, S., Gao, X. & Li, T. (2009) miRecords: an integrated resource for microRNA-target interactions. Nucleic Acids Research, 37, D105D110.