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  • Andrulis, E.D., Guzman, E., Doring, P., Werner, J. & Lis, J.T. (2000) High-resolution localization of Drosophila Spt5 and Spt6 at heat shock genes in vivo: roles in promoter proximal pausing and transcription elongation. Genes Dev. 14, 26352649.
  • Bai, X., Kim, J., Yang, Z., et al. (2010) TIF1gamma controls erythroid cell fate by regulating transcription elongation. Cell 142, 133143.
  • Chen, Y., Yamaguchi, Y., Tsugeno, Y., Yamamoto, J., Yamada, T., Nakamura, M., Hisatake, K. & Handa, H. (2009) DSIF, the Paf1 complex, and Tat-SF1 have nonredundant, cooperative roles in RNA polymerase II elongation. Genes Dev. 23, 27652777.
  • Cheng, B. & Price, D.H. (2007) Properties of RNA polymerase II elongation complexes before and after the P-TEFb-mediated transition into productive elongation. J. Biol. Chem. 282, 2190121912.
  • Core, L.J., Waterfall, J.J. & Lis, J.T. (2008) Nascent RNA sequencing reveals widespread pausing and divergent initiation at human promoters. Science 322, 18451848.
  • Drummond, I.A., Majumdar, A., Hentschel, H., Elger, M., Solnica-Krezel, L., Schier, A.F., Neuhauss, S.C., Stemple, D.L., Zwartkruis, F., Rangini, Z., Driever, W. & Fishman, M.C. (1998) Early development of the zebrafish pronephros and analysis of mutations affecting pronephric function. Development 125, 46554667.
  • Elagib, K.E., Mihaylov, I.S., Delehanty, L.L., Bullock, G.C., Ouma, K.D., Caronia, J.F., Gonias, S.L. & Goldfarb, A.N. (2008) Cross-talk of GATA-1 and P-TEFb in megakaryocyte differentiation. Blood 112, 48844894.
  • Ferreira, R., Ohneda, K., Yamamoto, M. & Philipsen, S. (2005) GATA1 function, a paradigm for transcription factors in hematopoiesis. Mol. Cell. Biol. 25, 12151227.
  • Guo, S., Yamaguchi, Y., Schilbach, S., Wada, T., Lee, J., Goddard, A., French, D., Handa, H. & Rosenthal, A. (2000) A regulator of transcriptional elongation controls vertebrate neuronal development. Nature 408, 366369.
  • Harlow, E. & Lane, D. (1988) Antibodies: A Laboratory Manual. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY.
  • Hartzog, G.A., Wada, T., Handa, H. & Winston, F. (1998) Evidence that Spt4, Spt5, and Spt6 control transcription elongation by RNA polymerase II in Saccharomyces cerevisiae. Genes Dev. 12, 357369.
  • Hsia, N. & Zon, L.I. (2005) Transcriptional regulation of hematopoietic stem cell development in zebrafish. Exp. Hematol. 33, 10071014.
  • Ito, T., Arimitsu, N., Takeuchi, M., Kawamura, N., Nagata, M., Saso, K., Akimitsu, N., Hamamoto, H., Natori, S., Miyajima, A. & Sekimizu, K. (2006) Transcription elongation factor S-II is required for definitive hematopoiesis. Mol. Cell. Biol. 26, 31943203.
  • Ivanov, D., Kwak, Y.T., Guo, J. & Gaynor, R.B. (2000) Domains in the SPT5 protein that modulate its transcriptional regulatory properties. Mol. Cell. Biol. 20, 29702983.
  • James, C.G., Ulici, V., Tuckermann, J., Underhill, T.M. & Beier, F. (2007) Expression profiling of Dexamethasone-treated primary chondrocytes identifies targets of glucocorticoid signalling in endochondral bone development. BMC Genomics 8, 205.
  • Jennings, B.H., Shah, S., Yamaguchi, Y., Seki, M., Phillips, R.G., Handa, H. & Ish-Horowicz, D. (2004) Locus-specific requirements for Spt5 in transcriptional activation and repression in Drosophila. Curr. Biol. 14, 16801684.
  • Jowett, T. (2001) Double in situ hybridization techniques in zebrafish. Methods 23, 345358.
  • Kaplan, C.D., Morris, J.R., Wu, C. & Winston, F. (2000) Spt5 and Spt6 are associated with active transcription and have characteristics of general elongation factors in D. melanogaster. Genes Dev. 14, 26232634.
  • Kawahara, A. & Dawid, I.B. (2001) Critical role of biklf in erythroid cell differentiation in zebrafish. Curr. Biol. 11, 13531357.
  • Keegan, B.R., Feldman, J.L., Lee, D.H., Koos, D.S., Ho, R.K., Stainier, D.Y. & Yelon, D. (2002) The elongation factors Pandora/Spt6 and Foggy/Spt5 promote transcription in the zebrafish embryo. Development 129, 16231632.
  • Komori, T., Inukai, N., Yamada, T., Yamaguchi, Y. & Handa, H. (2009) Role of human transcription elongation factor DSIF in the suppression of senescence and apoptosis. Genes Cells 14, 343354.
  • Krishnan, K., Salomonis, N. & Guo, S. (2008) Identification of Spt5 target genes in zebrafish development reveals its dual activity in vivo. PLoS ONE 3, e3621.
  • Lecuyer, E. & Hoang, T. (2004) SCL: from the origin of hematopoiesis to stem cells and leukemia. Exp. Hematol. 32, 1124.
  • Long, Q., Meng, A., Wang, H., Jessen, J.R., Farrell, M.J. & Lin, S. (1997) GATA-1 expression pattern can be recapitulated in living transgenic zebrafish using GFP reporter gene. Development 124, 41054111.
  • Lyons, S.E., Lawson, N.D., Lei, L., Bennett, P.E., Weinstein, B.M. & Liu, P.P. (2002) A nonsense mutation in zebrafish gata1 causes the bloodless phenotype in vlad tepes. Proc. Natl Acad. Sci. USA 99, 54545459.
  • Meier, N., Krpic, S., Rodriguez, P., Strouboulis, J., Monti, M., Krijgsveld, J., Gering, M., Patient, R., Hostert, A. & Grosveld, F. (2006) Novel binding partners of Ldb1 are required for haematopoietic development. Development 133, 49134923.
  • Muse, G.W., Gilchrist, D.A., Nechaev, S., Shah, R., Parker, J.S., Grissom, S.F., Zeitlinger, J. & Adelman, K. (2007) RNA polymerase is poised for activation across the genome. Nat. Genet. 39, 15071511.
  • Nojima, M., Huang, Y., Tyagi, M., Kao, H.Y. & Fujinaga, K. (2008) The positive transcription elongation factor b is an essential cofactor for the activation of transcription by myocyte enhancer factor 2. J. Mol. Biol. 382, 275287.
  • Orphanides, G. & Reinberg, D. (2002) A unified theory of gene expression. Cell 108, 439451.
  • Peterlin, B.M. & Price, D.H. (2006) Controlling the elongation phase of transcription with P-TEFb. Mol. Cell 23, 297305.
  • Price, D.H. (2008) Poised polymerases: on your mark...get set...go!. Mol. Cell 30, 710.
  • Rahl, P.B., Lin, C.Y., Seila, A.C., Flynn, R.A., McCuine, S., Burge, C.B., Sharp, P.A. & Young, R.A. (2010) c-Myc regulates transcriptional pause release. Cell 141, 432445.
  • Sawado, T., Halow, J., Bender, M.A. & Groudine, M. (2003) The beta-globin locus control region (LCR) functions primarily by enhancing the transition from transcription initiation to elongation. Genes Dev. 17, 10091018.
  • Sims, R.J. 3rd, Belotserkovskaya, R. & Reinberg, D. (2004) Elongation by RNA polymerase II: the short and long of it. Genes Dev. 18, 24372468.
  • Soler, E., Andrieu-Soler, C., de Boer, E., Bryne, J.C., Thongjuea, S., Stadhouders, R., Palstra, R.J., Stevens, M., Kockx, C., van Ijcken, W., Hou, J., Steinhoff, C., Rijkers, E., Lenhard, B. & Grosveld, F. (2010) The genome-wide dynamics of the binding of Ldb1 complexes during erythroid differentiation. Genes Dev. 24, 277289.
  • Wada, T., Takagi, T., Yamaguchi, Y., Ferdous, A., Imai, T., Hirose, S., Sugimoto, S., Yano, K., Hartzog, G.A., Winston, F., Buratowski, S. & Handa, H. (1998a) DSIF, a novel transcription elongation factor that regulates RNA polymerase II processivity, is composed of human Spt4 and Spt5 homologs. Genes Dev. 12, 343356.
  • Wada, T., Takagi, T., Yamaguchi, Y., Watanabe, D. & Handa, H. (1998b) Evidence that P-TEFb alleviates the negative effect of DSIF on RNA polymerase II-dependent transcription in vitro. EMBO J. 17, 73957403.
  • Westerfield, M. (1995) The Zebrafish Book: A Guide to the Laboratory Use of Zebrafish (Danio rerio). Eugene, OR: University of Oregon Press..
  • Wu, C.H., Yamaguchi, Y., Benjamin, L.R., Horvat-Gordon, M., Washinsky, J., Enerly, E., Larsson, J., Lambertsson, A., Handa, H. & Gilmour, D. (2003) NELF and DSIF cause promoter proximal pausing on the hsp70 promoter in Drosophila. Genes Dev. 17, 14021414.
  • Yamada, T., Yamaguchi, Y., Inukai, N., Okamoto, S., Mura, T. & Handa, H. (2006) P-TEFb-mediated phosphorylation of hSpt5 C-terminal repeats is critical for processive transcription elongation. Mol. Cell 21, 227237.
  • Yamaguchi, Y., Takagi, T., Wada, T., Yano, K., Furuya, A., Sugimoto, S., Hasegawa, J. & Handa, H. (1999a) NELF, a multisubunit complex containing RD, cooperates with DSIF to repress RNA polymerase II elongation. Cell 97, 4151.
  • Yamaguchi, Y., Wada, T., Watanabe, D., Takagi, T., Hasegawa, J. & Handa, H. (1999b) Structure and function of the human transcription elongation factor DSIF. J. Biol. Chem. 274, 80858092.
  • Zeitlinger, J., Stark, A., Kellis, M., Hong, J.W., Nechaev, S., Adelman, K., Levine, M. & Young, R.A. (2007) RNA polymerase stalling at developmental control genes in the Drosophila melanogaster embryo. Nat. Genet. 39, 15121516.