These authors contributed equally.
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Genome annotation and comparative analyses of the odorant-binding proteins and chemosensory proteins in the pea aphid Acyrthosiphon pisum
Article first published online: 23 FEB 2010
DOI: 10.1111/j.1365-2583.2009.00919.x
© 2010 The Authors. Journal compilation © 2010 The Royal Entomological Society
Issue
Insect Molecular Biology
Special Issue: The Aphid Genome
Volume 19, Issue Supplement s2, pages 113–122, March 2010
Additional Information
How to Cite
Zhou, J.-J., Vieira, F. G., He, X.-L., Smadja, C., Liu, R., Rozas, J. and Field, L. M. (2010), Genome annotation and comparative analyses of the odorant-binding proteins and chemosensory proteins in the pea aphid Acyrthosiphon pisum. Insect Molecular Biology, 19: 113–122. doi: 10.1111/j.1365-2583.2009.00919.x
- †
These authors contributed equally.
Publication History
- Issue published online: 23 FEB 2010
- Article first published online: 23 FEB 2010
References
- , and (2001) Accuracy and power of the likelihood ratio test in detecting adaptive molecular evolution. Mol Biol Evol 18: 1585–1592.
- and (2000) Aphids on the World's Crops: an Identification and Information Guide, 2nd edn. John Wiley & Sons Ltd, Chichester.
- , , , , and (2007) Molecular characterization of the Aedes aegypti odorant receptor gene family. Insect Mol Biol 16: 525–537.
- , and (1990) A novel class of binding proteins in the antennae of the silkmoth Antheraea pernyi. Insect Biochem 20: 735–740.
- , , , , and (2003) Responses of the aphids Phorodon humuli and Rhopalosiphum padi to sex pheromone stereochemistry in the field. J Chem Ecol 29: 2225–2234.
- , and (2000) Candidate taste receptors in Drosophila. Science 287: 1830–1834.
- , and (2006) A test of morphological hypotheses for tribal and subtribal relationships of Aphidinae (Insecta: Hemiptera: Aphididae) using DNA sequences. Mol Phylogenet Evol 38: 316–329.
- , , , , and (2008) The red flour beetle's large nose: an expanded odorant receptor gene family in Tribolium castaneum. Insect Biochem Mol Biol 38: 387–397.
- and (2006) Function and evolution of a gene family encoding odorant binding-like proteins in a social insect, the honey bee (Apis mellifera). Genome Res 16: 1404–1413.
- , , , , and (2001) Candidate odorant receptors from the malaria vector mosquito Anopheles gambiae and evidence of down-regulation in response to blood feeding. Proc Natl Acad Sci USA 98: 14693–14697.
- , and (2006) A pheromone-binding protein mediates the bombykol-induced activation of a pheromone receptor in vitro. Chem Senses 31: 547–555.
- , , , and (1993) Specificity of sex pheromones, the role of host-plant odour in the olfactory attraction of males, and mate recognition in the aphid Cryptomyzus. Physiol Entomol 18: 137–143.
- , and (1994) Perception of volatiles associated with sex and food by different adult forms of the black bean aphid, Aphis fabae. Physiol Entomol 19: 278–284.
- , , , , and (1997) Sex pheromone stereochemistry and purity affect field catches of male aphids. J Chem Ecol 23: 2547–2554.
- , , and (2002) Genomewide analysis of the odorant-binding protein gene family in Drosophila melanogaster. Genome Res 12: 1357–1369.
- , , , and (2004) PrediSi: prediction of signal peptides and their cleavage positions. Nucleic Acids Res 32: 375–379.
- , , , , and (2005) OS-D-like genes and their expression in aphids (Hemiptera:Aphididae). Insect Mol Biol 14: 423–432.
- , , and (2005) MAFFT version 5: improvement in accuracy of multiple sequence alignment. Nucleic Acids Res 33: 511–518.
- , and (2008) The Gr family of candidate gustatory and olfactory receptors in the yellow-fever mosquito Aedes aegypti. Chem Senses 33: 79–93.
- , , and (1993) Odorant binding proteins of Heliothis virescens. Insect Biochem Mol Biol 23: 449–456.
- , , and (2008) Activation of pheromone-sensitive neurons is mediated by conformational activation of pheromone-binding protein. Cell 133: 1255–1265.
- , and (1999) Disulfide structure of the pheromone binding protein from the silkworm moth, Bombyx mori. FEBS Lett 24: 85–90.
- and (2007) Interactive Tree Of Life (iTOL): an online tool for phylogenetic tree display and annotation. Bioinformatics 23: 127–128.
- , , and (2004) Identification and expression of odorant-binding proteins of the malaria-carrying mosquitoes Anopheles gambiae and Anopheles arabiensis. Arch Insect Biochem Physiol 58: 175–189.
- , , , , , et al. (1996) The potential of semiochemicals for control of Phorodon humuli (Homoptera: Aphididae). Pesticide Sci 48: 293–303.
- , , and (2008) Learning how to live together: genomic insights into prokaryote–animal symbioses. Nat Rev Genet 9: 218–229.
- and (2005) Concerted and birth-and-death evolution of multigene families. Annu Rev Genet 39: 121–152.
- , , and (2006) Soluble proteins in insect chemical communication. Cell Mol Life Sci 63: 1658–1676.
- , and (1996) High intrinsic rate of DNA loss in Drosophila. Nature 384: 346–349.
- , , and (1992) The chemical ecology of aphids. Ann Rev Ent 37: 67–90.
- (2004) Pheromone-binding proteins contribute to the activation of olfactory receptor neurons in the silkmoths Antheraea polyphemus and Bombyx mori. Chem Senses 29: 117–125.
- and (2006) The chemoreceptor superfamily in the honey bee, Apis mellifera: expansion of the odorant, but not gustatory, receptor family. Genome Res 16: 1395–1403.
- , and (2003) Molecular evolution of the insect chemoreceptor gene superfamily in Drosophila melanogaster. Proc Natl Acad Sci USA 100 (Suppl 2): 14537–14542.
- and (2003) MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 19: 1572–1574.
- and (2008) Divergent evolution and molecular adaptation in the Drosophila odorant-binding protein family: inferences from sequence variation at the OS-E and OS-F genes. BMC Evol Biol 8: 323.
- , and (2009) Molecular evolution of the major chemosensory gene families in insects. Heredity 103: 208–216.
- , , and (2000) Sexual attraction in the silkworm moth: structure of the pheromone-binding-protein-bombykol complex. Chem Biol 7: 143–151.
- , , and (1999) Structural analysis and disulfide-bridge pairing of two odorant-binding proteins from Bombyx mori. Biochem Biophys Res Comm 266: 386–391.
- , , and (2009) Large gene expansions and adaptive evolution of odorant and gustatory receptor genes in the pea aphid, Acyrthosiphon pisum. Mol Biol Evol 26: 2073–2086.
- , and (2003) Pervasive adaptive evolution in mammalian fertilization proteins. Mol Biol Evol 20: 18–20.
- , and (2004) Structural aspects of sexual attraction and chemical communication in insects. Trends Biochem Sci 29: 257–264.
- , and (2007) Comparative genomic analysis of the odorant-binding protein family in 12 Drosophila genomes: purifying selection and birth-and-death evolution. Genome Biol 8: R235.
- , , and (2002) A comparative study of odorant binding protein genes: differential expression of the PBP1-GOBP2 gene cluster in Manduca sexta (Lepidoptera) and the organization of OBP genes in Drosophila melanogaster (Diptera). J Exp Biol 205: 719–744.
- and (2008) The gustatory receptor family in the silkworm moth Bombyx mori is characterized by a large expansion of a single lineage of putative bitter receptors. Insect Mol Biol 17: 621–629.
- (2002) Genome evolution in bacterial endosymbionts of insects. Nat Rev Genet 3: 850–861.
- and (2001) A general empirical model of protein evolution derived from multiple protein families using a maximum-likelihood approach. Mol Biol Evol 18: 691–699.
- , , and (2004) Accuracy and power of statistical methods for detecting adaptive evolution in protein coding sequences and for identifying positively selected sites. Genet 168: 1041–1051.
- , and (2003) Identification of a distinct family of genes encoding atypical odorant-binding proteins in the malaria vector mosquito, Anopheles gambiae. Insect Mol Biol 12: 549–560.
- (2007) PAML 4: phylogenetic analysis by maximum likelihood. Mol Biol Evol 24: 1586–1591.
- et al. (2002) Comparative genome and proteome analysis of Anopheles gambiae and Drosophila melanogaster. Science 298: 149–159.
- , , , and (2004) ‘Plus-C’ odorant-binding protein genes in two Drosophila species and the malaria mosquito An. gambiae. Gene 327: 117–129.
- , , , and (2006) Genome and EST analyses and expression of a gene family with putative functions in insect chemoreception. Chem Senses 31: 453–465.
- , , and (2008) Identification of odorant-binding proteins of the yellow fever mosquito Aedes aegypti: genome annotation and comparative analyses. Insect Mol Biol 17: 147–163.
- , , , , , et al. (2009) Characterisation of Bombyx mori odorant-binding proteins reveals that a ‘General Odorant-Binding Protein’ discriminates between sex pheromone components. J Mol Biol 389: 529–545.