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AphidBase: a centralized bioinformatic resource for annotation of the pea aphid genome

  1. F. Legeai1,2,*,
  2. S. Shigenobu3,4,5,
  3. J.-P. Gauthier1,
  4. J. Colbourne6,
  5. C. Rispe1,
  6. O. Collin2,
  7. S. Richards7,
  8. A. C. C. Wilson8,
  9. T. Murphy9,
  10. D. Tagu1

Article first published online: 23 FEB 2010

DOI: 10.1111/j.1365-2583.2009.00930.x

Issue

Insect Molecular Biology

Insect Molecular Biology

Special Issue: The Aphid Genome

Volume 19, Issue Supplement s2, pages 5–12, March 2010

Additional Information

How to Cite

Legeai, F., Shigenobu, S., Gauthier, J.-P., Colbourne, J., Rispe, C., Collin, O., Richards, S., Wilson, A. C. C., Murphy, T. and Tagu, D. (2010), AphidBase: a centralized bioinformatic resource for annotation of the pea aphid genome. Insect Molecular Biology, 19: 5–12. doi: 10.1111/j.1365-2583.2009.00930.x

Author Information

  1. 1

    INRA UMR, Le Rheu cedex, France;

  2. 2

    INRIA Centre Rennes – Bretagne Atlantique, GenOuest, Campus de Beaulieu, Rennes, France;

  3. 3

    Department of Ecology and Evolutionary Biology, Princeton University, Princeton, NJ, USA;

  4. 4

    PRESTO, JST, Saitama, Japan;

  5. 5

    Okazaki Institute for Integrative Bioscience, National Institutes of Natural Sciences, Okazaki, Japan;

  6. 6

    The Center for Genomics and Bioinformatics, School of Informatics and Department of Biology, Indiana University, IN, USA;

  7. 7

    Human Genome Sequencing Center, Department of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX, USA;

  8. 8

    Department of Biology, University of Miami, Coral Gables, FL, USA; and

  9. 9

    National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, MD, USA

*Fabrice Legeai, INRIA –équipe Symbiose, Campus de Beaulieu, 35042 Rennes, cedex, France. Tel.: +33 (0) 299 8471 18; fax: +33 (0) 299 8471 71; e-mail: fabrice.legeai@rennes.inra.fr

Publication History

  1. Issue published online: 23 FEB 2010
  2. Article first published online: 23 FEB 2010

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Figure S1. Annotation Guidelines published on the International Aphid Genomics Consortium wiki ( https://dgc.cgb.indiana.edu/display/aphid/Annotation+Guidelines).

Figure S2. Instructions and recommendations for the the manual annotation using Apollo published on the International Aphid Genomics Consortium wiki ( https://dgc.cgb.indiana.edu/display/aphid/Manual+annotation+using+Apollo).

Figure S3. Gene nomenclature recommendations published on the International Aphid Genomics Consortium wiki (https://dgc.cgb.indiana.edu/display/aphid/Nomenclature).

Figure S4. Suggested workflow for gene annotation published on the International Aphid Genomics Consortium wiki (https://dgc.cgb.indiana.edu/display/aphid/Workflow).

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