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Figure S1. Phylogenetic tree of Acyrthosiphon pisum and Drosophila melanogaster actin (Act) and actin-related proteins (Arp and Actr). The phylogenetic tree was generated as described in the Experimental procedures section. The numbers on the branches represent the percentage of 1000 bootstrap pseudosamples supporting that branch; only values >40% are shown.

Figure S2. Phylogenetic tree of Acyrthosiphon pisum and Drosophila melanogaster Rab proteins. The phylogenetic tree was generated as described in the Experimental procedures section. The numbers on the branches represent the percentage of 1000 bootstrap pseudosamples supporting that branch; only values >40% are shown.

Figure S3. Phylogenetic tree of SNARE domain-containing proteins including those identified from Acyrthosiphon pisum. Pfam PF05739 was used as the seed region and a phylogenetic tree generated as described in the Experimental procedure section. The numbers on the branches represent the percentage of 1000 bootstrap pseudosamples supporting that branch; only values >40% are shown.

Figure S4. Phylogenetic tree of GAPDH proteins including those identified from Acyrthosiphon pisum. The phylogenetic tree was generated as described in the Experimental procedures section. The numbers on the branches represent the percentage of 1000 bootstrap pseudosamples supporting that branch; only values >40% are shown. Sequences from Acyrthosiphon pisum, Aedes aegypti, Apis mellifera, Bombix mori, Buchnera aphidicola str. APS (Acyrthosiphon pisum), Culex pipiens quinquefasciatus, Drosophila melanogaster, Homo sapiens, Nasonia vitripennis and Tribolium castaneum were used.

Table S1. Prevalence and functions of endocytic genes in Drosophila melanogaster and Acyrthosiphon pisum

Table S2. Prevalence of Ldlrap1 and ced-6 genes in insect species

Table S3. Results of the test of purifying selection for the RabX4 and Rab32 genes

Table S4. Prevalence of synaptotagmin genes across insects

Table S5. Annotation of Acyrthosiphon pisum genes showing similarities to GAPDH, cyclophilin and luciferase

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