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References

  • Altschul, S.F., Madden, T.L., Schaffer, A.A., Zhang, J., Zhang, Z., Miller, W. et al. (1997) Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleilc Acids Res 25: 33893402.
  • Aronson, N.N., Jr, Halloran, B.A., Alexyev, M.F., Amable, L., Madura, J.D., Pasupulati, L. et al. (2003) Family 18 chitinase-oligosaccharide substrate interaction: subsite preference and anomer selectivity of Serratia marcescens chitinase A. Biochem J 376: 8795.
  • Baehrecke, E.H. (2002) How death shapes life during development. Nat Rev Mol Cell Biol 3: 779787.
  • Bendtsen, J.D., Nielsen, H., Von Heijne, G. and Brunak, S. (2004) Improved prediction of signal peptides: SignalP 3.0. J Mol Biol 340: 783795.
  • Cristofoletti, P.T., Ribeiro, A.F., Deraison, C., Rahbe, Y. and Terra, W.R. (2003) Midgut adaptation and digestive enzyme distribution in a phloem feeding insect, the pea aphid Acyrthosiphon pisum. J Insect Physiol 49: 1124.
  • Daimon, T., Hamada, K., Mita, K., Okano, K., Suzuki, M.G., Kobayashi, M. et al. (2003) A Bombyx mori gene, BmChi-h, encodes a protein homologous to bacterial and baculovirus chitinases. Insect Biochem Mol Biol 33: 749759.
  • Daimon, T., Katsuma, S., Iwanaga, M., Kang, W. and Shimada, T. (2005) The BmChi-h gene, a bacterial-type chitinase gene of Bombyx mori, encodes a functional exochitinase that plays a role in the chitin degradation during the molting process. Insect Biochem Mol Biol 35: 11121123.
  • De La Vega, H., Specht, C.A., Liu, Y. and Robbins, P.W. (1998) Chitinases are a multi-gene family in Aedes, Anopheles and Drosophila. Insect Mol Biol 7: 233239.
  • Elsik, C.G., Mackey, A.J., Reese, J.T., Milshina, N.V., Roos, D.S. and Weinstock, G.M. (2007) Creating a honey bee consensus gene set. Genome Biol 8: R13.
  • Emanuelsson, O., Nielsen, H., Brunak, S. and Von Heijne, G. (2000) Predicting subcellular localization of proteins based on their N-terminal amino acid sequence. J Mol Biol 300: 10051016.
  • Felsenstein, J. (1981) Evolutionary trees from DNA sequences: a maximum likelihood approach. J Mol Evol 17: 368376.
  • Felsenstein, J. (1985) Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39: 783791.
  • Filho, B.P., Lemos, F.J., Secundino, N.F., Pascoa, V., Pereira, S.T. and Pimenta, P.F. (2002) Presence of chitinase and beta-N-acetylglucosaminidase in the Aedes aegypti: a chitinolytic system involving peritrophic matrix formation and degradation. Insect Biochem Mol Biol 32: 17231729.
  • Finn, R.D., Tate, J., Mistry, J., Coggill, P.C., Sammut, S.J., Hotz, H.R. et al. (2008) The Pfam protein families database. Nucleic Acids Res 36: D281D288.
  • Funkhouser, J.D. and Aronson, N.N., Jr (2007) Chitinase family GH18: evolutionary insights from the genomic history of a diverse protein family. BMC Evol Biol 7: 96.
  • International Aphid Genomics Consortium (2010) Genome sequence of the pea aphid Acyrthosiphon pisum. PLoS Biol, DOI 10.1371/journals.pbio.1000313.
  • Irving, P. and Fenton, B. (1996) Molecular and adaptive variation in aphid guts. Scottish Crop Res Inst Annual Rep 1995: 154155.
  • Jones, D.T., Taylor, W.R. and Thornton, J.M. (1992) The rapid generation of mutation data matrices from protein sequences. Comput Appl Biosci 8: 275282.
  • Kawamura, K., Shibata, T., Saget, O., Peel, D. and Bryant, P.J. (1999) A new family of growth factors produced by the fat body and active on Drosophila imaginal disc cells. Development 126: 211219.
  • Kramer, K.J. and Muthukrishnan, S. (1997) Insect chitinases: molecular biology and potential use as biopesticides. Insect Biochem Mol Biol 27: 887900.
  • Krogh, A., Larsson, B., Von Heijne, G. and Sonnhammer, E.L. (2001) Predicting transmembrane protein topology with a hidden Markov model: application to complete genomes. J Mol Biol 305: 567580.
  • Marchler-Bauer, A., Anderson, J.B., Derbyshire, M.K., DeWeese-Scott, C., Gonzales, N.R., Gwadz, M. et al. (2007) CDD: a conserved domain database for interactive domain family analysis. Nucleic Acids Res 35: D237D240.
  • Merzendorfer, H. and Zimoch, L. (2003) Chitin metabolism in insects: structure, function and regulation of chitin synthases and chitinases. J Exp Biol 206: 43934412.
  • Nakabachi, A., Shigenobu, S., Sakazume, N., Shiraki, T., Hayashizaki, Y., Carninci, P. et al. (2005) Transcriptome analysis of the aphid bacteriocyte, the symbiotic host cell that harbors an endocellular mutualistic bacterium, Buchnera. Proc Natl Acad Sci USA 102: 54775482.
  • Ronquist, F. and Huelsenbeck, J.P. (2003) MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 19: 15721574.
  • Saitou, N. and Nei, M. (1987) The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4: 406425.
  • Shigenobu, S., Richards, S., Cree, A.G., Morioka, M., Fukatsu, T., Kudo, T. et al. (2010) A full-length cDNA resource for the pea aphid, Acyrthosiphon pisum. Insect Mol Biol 19 (Suppl. 2): 197205.
  • Shuhui, L., Mok, Y.K. and Wong, W.S. (2009) Role of mammalian chitinases in asthma. Int Arch Allergy Immunol 149: 369377.
  • Silva, C.P., Silva, J.R., Vasconcelos, F.F., Petretski, M.D., Damatta, R.A., Ribeiro, A.F. et al. (2004) Occurrence of midgut perimicrovillar membranes in paraneopteran insect orders with comments on their function and evolutionary significance. Arthropod Struct Dev 33: 139148.
  • Stamatakis, A. (2006) RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models. Bioinformatics 22: 26882690.
  • Suzuki, T., Yano, K., Sugimoto, S., Kitajima, K., Lennarz, W.J., Inoue, S. et al. (2002) Endo-beta-N-acetylglucosaminidase, an enzyme involved in processing of free oligosaccharides in the cytosol. Proc Natl Acad Sci USA 99: 96919696.
  • Tamura, K., Dudley, J., Nei, M. and Kumar, S. (2007) MEGA4: molecular evolutionary genetics analysis (MEGA) software version 4.0. Mol Biol Evol 24: 15961599.
  • Tellam, R.L., Wijffels, G. and Willadsen, P. (1999) Peritrophic matrix proteins. Insect Biochem Mol Biol 29: 87101.
  • Thompson, J.D., Higgins, D.G. and Gibson, T.J. (1994) CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res 22: 46734680.
  • Van Aalten, D.M., Komander, D., Synstad, B., Gaseidnes, S., Peter, M.G. and Eijsink, V.G. (2001) Structural insights into the catalytic mechanism of a family 18 exo-chitinase. Proc Natl Acad Sci USA 98: 89798984.
  • Waddling, C.A., Plummer, T.H., Jr, Tarentino, A.L. and Van Roey, P. (2000) Structural basis for the substrate specificity of endo-beta-N-acetylglucosaminidase F(3). Biochemistry 39: 78787885.
  • Whitehead, L.F. and Douglas, A.E. (1993) Populations of symbiotic bacteria in the parthenogenetic pea aphid (Acyrthosiphon pisum) symbiosis. Proc R Soc Lond B Biol Sci 254: 2932.
  • Zhu, Q., Arakane, Y., Banerjee, D., Beeman, R.W., Kramer, K.J. and Muthukrishnan, S. (2008) Domain organization and phylogenetic analysis of the chitinase-like family of proteins in three species of insects. Insect Biochem Mol Biol 38: 452466.
  • Zhu, Q., Deng, Y., Vanka, P., Brown, S.J., Muthukrishnan, S. and Kramer, K.J. (2004) Computational identification of novel chitinase-like proteins in the Drosophila melanogaster genome. Bioinformatics 20: 161169.