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Multi-scale features for identifying individuals in large biological databases: an application of pattern recognition technology to the marbled salamander Ambystoma opacum
Article first published online: 29 AUG 2007
DOI: 10.1111/j.1365-2664.2007.01368.x
© 2007 The Authors
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How to Cite
Gamble, L., Ravela, S. and McGarigal, K. (2008), Multi-scale features for identifying individuals in large biological databases: an application of pattern recognition technology to the marbled salamander Ambystoma opacum. Journal of Applied Ecology, 45: 170–180. doi: 10.1111/j.1365-2664.2007.01368.x
Publication History
- Issue published online: 29 AUG 2007
- Article first published online: 29 AUG 2007
- Received 29 September 2006; accepted 12 June 2007; Handling Editor: Robert Freckleton
References
- , , , & (2000) A string matching computer-assisted system for dolphin photoidentification. Annals of Biomedical Engineering, 28, 1269–1279.
- , & (2005) An astronomical pattern-matching algorithm for computer-aided identification of whale sharks Rhincodon typus. Journal of Applied Ecology, 42, 999–1011.
- , & (2004) Estimating detection probability parameters for Plethodon salamanders using the robust capture–recapture design. Journal of Wildlife Management, 68, 1–13.
- , , & (2004) Guidelines for Use of Live Amphibians and Reptiles in Field and Laboratory Research. American Society of Ichthyologists and Herpetologists, Miami, FL.
- & (1995) Manatee individual photo-identification system. Sirenia Project, US Geological Survey, Gainesville, FL.
- & (2005) Experimental evidence that nest attendance benefits female marbled salamanders (Ambystoma opacum) by reducing egg mortality. American Midland Naturalist, 154, 398–411.
- & (2001) Individual recognition of amphibians: effects of toe clipping and fluorescent tagging on the salamander Plethodon vehiculum. Journal of Herpetology, 35, 2.
- , , & (1994) Techniques for marking amphibians. Measuring and Monitoring Biological Diversity: Standard Methods for Amphibians (eds W.R.Heyer, M.A.Donnelly, R.W.McDiarmid, L.C.Hayek & M.S.Foster). Smithsonian Institution Press, Washington, DC.
- (2003) EUROPHLUKES Database Specifications Handbook. http://www.europhlukes.net .
- (1966) The giraffe of Nairobi National Park: home range, sex ratios, the herd, and food. East African Wildlife Journal, 4, 139–148.
- , & (2005) Alternative views of amphibian toe-clipping. Nature, 433, 193–193.
- , & (in press) Fidelity and dispersal in the pond-breeding amphibian, Ambystoma opacum: implications for spatio-temporal population dynamics and conservation. Biological Conservation.
- , , & (2006) Limitations of regulated ‘buffer zones’ for the conservation of marbled salamanders. Wetlands, 26, 298–306.
- (1978) Metapopulation ecology of red-spotted newt, Notophthalmus viridescens (Rafinesque). Ecological Monographs, 48, 145–166.
- (1971) Environmental effects of deme structure, dynamics and breeding strategy of Ambystoma opacum (Amphibia: Ambystomatidae), with an hypothesis on the probable origin of the marbled salamander life-style. Doctoral Dissertation. Rutgers University, New Brunswick, NJ.
- & (2006) Addressing error in identification of Ambystoma maculatum (spotted salamanders) using spot patterns. Herpetological Review, 37, 57–60.
- , & (1990) Report of the workshop on individual recognition and estimation of cetacean population parameters. Special Issue no. 12. International Whaling Commission, Cambridge, UK.
- & (1990) Computer aided matching of natural markings: a prototype system for grey seals. Individual Recognition of Cetaceans: Use of Photo-identification and Other Techniques to Estimate Population Parameters (eds P.S.Hammond, S.A.Mizroch & G.P.Donovan), pp. 57–61. Special Issue no. 12. International Whaling Commission, Cambridge, UK.
- & (2001) A note on an automated system for matching the callosity patterns on aerial photographs of southern right whales. Journal of Cetacean Research and Management, Special Issue , 2, 291–295.
- , & (2003) Comparative effectiveness of two trapping techniques for surveying the abundance and diversity of reptiles and amphibians along drift fence arrays. Herpetological Review, 34, 39–42.
- & (1978) Non-cost of brooding in Ambystoma opacum. Copeia, 1978, 99–103.
- , , , & (2005) Photo-identification, site fidelity, and movement of female gray seals (Halichoerus grypus) between haul-outs in the Baltic Sea. Ambio, 34, 628–634.
- (2001) Computer-aided photograph matching in studies using individual identification: an example from Serengeti cheetahs. Journal of Mammalogy, 82, 440–449.
- & (1994) Terrestrial courtship affects mating locations in Ambystoma opacum. Herpetologica, 50, 46–50.
- , , , & (2003) Estimating the population size of an endangered population of Rana porosa brevipoda (Amphibia: Ranidae) from photographic identification. Herpetological Review, 34, 348–349.
- (1994) Scale-Space Theory in Computer Vision. Kluwer Academic Publishers, Boston, MA.
- (1936) On the generalized distance in statistics. Proceedings of the National Institute of Science, India, 12, 49–55.
- Matlab (2002) Matlab, Version 6·5. The Mathworks Inc., Natick, MA.
- & (2004) Clarifying the effect of toe clipping on frogs with Bayesian statistics. Journal of Applied Ecology, 41, 780–786.
- , & (2002) Assessing allelic dropout and genotype reliability using maximum likelihood. Genetics, 160, 357–366.
- , & (1990) Computer assisted photo-identification of humpback whales. Individual Recognition of Cetaceans: Use of Photo-identification and Other Techniques to Estimate Population Parameters (eds P.S.Hammond, S.A.Mizroch & G.P.Donovan), pp. 63–70. Special Issue no. 12. International Whaling Commission, Cambridge, UK.
- , & (1994) Wildlife marking techniques. Research and Management Techniques for Wildlife Habitats (ed. T.A.Brookhout), pp. 140–168. The Wildlife Society, Bethesda, MD.
- & (1933) Observations on the life history of the marbled salamander, Ambystoma opacum Gravenhorst. Zoologica, 11, 89–132.
- & (1999) Effects of toe-clipping and PIT-tagging on growth and survival in metamorphic Ambystoma opacum. Journal of Herpetology, 33, 344–348.
- & (2002) Using the phenology of pond-breeding amphibians to develop conservation strategies. Conservation Biology, 16, 194–204.
- & (2004) Photographic identification as a non-invasive marking technique for lacertid lizards. Herpetological Review, 35, 349–350.
- (1982) Photographic identification of individual grayling Thymallus thymallus based on the disposition of black dots and scales. Freshwater Biology, 12, 97–101.
- (1998) Salamanders of the United States and Canada. Smithsonian Institution Press, Washington, DC.
- & (2003) Trapping and marking terrestrial mammals for research: integrating ethics, performance criteria, techniques, and common sense. Ilar Journal, 44, 259–276.
- & (2000) Appearance-based global similarity retrieval of images. Advances in Information Retrieval (ed. W.B.Croft), pp. 267–299. Kluwer Academic Publishers, Norwell, MA.
- & (1999) Gaussian filtered representations of images. The Encyclopedia of Electrical and Electronic Engineering (ed. J.Webster), pp. 289–307. John Wiley & Sons, New York.
- & (2005) Effects of tag loss on direct estimates of population growth rate. Ecology, 86, 821–827.
- (2005) Species accounts –Ambystoma opacum, marbled salamander. Amphibian Declines: the Conservation Status of United States Species (ed. M.Lannoo), pp. 627–632. University of California Press, Berkeley, CA.
- & (1998) Are small, isolated wetlands expendable? Conservation Biology, 12, 1129–1133.
- (1985) Migratory orientation and homing in Ambystoma maculatum and Ambystoma opacum. Copeia, 1985, 631–637.
- , , & (2000) Life history and demographic variation in the California tiger salamander (Ambystoma californiense). Copeia, 2000, 365–377.
- & (1991) Eigen faces for recognition. Journal of Cognitive Neuroscience, 3, 71–86.
- & (2000) Elephants in Addo Elephant National Park, South Africa: reconstruction of the population's history. Oryx, 34, 46–55.
- , & (2002) Analysis and Management of Animal Populations: Modeling, Estimation, and Decision Making. Academic Press, San Diego, CA.
- (1983) Scale-space filtering. Proceedings of the 8th International Joint Conference on Artificial Intelligence (ed. A.Bundy), pp. 1019–1023. Morgan Kaufmann Publishers, San Francisco, CA.

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