SEARCH

SEARCH BY CITATION

References

  • Arnason, A.N. (1972) Parameter estimation for mark–recapture experiments on two populations subject to migration and death. Researches in Population Ecology, 13, 97113.
  • Barker, R.J. & Kavalieris, L. (2001) Efficiency gain from auxiliary data requiring additional nuisance parameters. Biometrics, 57, 563566.
  • Brownie, C., Hines, J.E., Nichols, J.D., Pollock, K.H. & Hestbeck, J.B. (1993) Capture–recapture studies for multiple strata including non-Markovian transitions. Biometrics, 49, 11731187.
  • Burnham, K.P. & Anderson, D.R. (2002) Model Selection and Multimodel Inference: A Practical Information-Theoretic Approach, 2nd edn. Springer-Verlag, New York.
  • Caley, P. & Hone, J. (2004) Disease transmission between and within species, and the implications for disease control. Journal of Applied Ecology, 41, 94104.
  • Caley, P. & Ramsey, D. (2001) Estimating disease transmission in wildlife, with emphasis on leptospirosis and bovine tuberculosis in possums, and effects of fertility control. Journal of Applied Ecology, 38, 13621370.
  • Caswell, H. (2001) Matrix Population Models, 2nd edn. Sinauer Associates, Sunderland, MA, USA.
  • Catchpole, E.A., Morgan, B.J.T. & Freeman, S. (1998) Estimation in parameter-redundant models. Biometrika, 85, 462468.
  • Choquet, R. (2007) E-SURGE 1-0 User's Manual. CEFE UMR 5175, Montpellier, France. URL http://ftp.cefe.cnrs.fr/biom/Soft-CR/.
  • Choquet, R., Reboulet, A.M., Pradel, R., Gimenez, O. & Lebreton, J-D. (2004) M-SURGE: new software specifically designed for multistate capture–recapture models. Animal Biodiversity and Conservation, 27, 207215.
  • Choquet, R., Rouan, L. & Pradel, R. (2008) Program E-SURGE: a software application for fitting multievent models. Environmental and Ecological Statistics, in press.
  • Dhondt, A.A., Altizer, S., Cooch, E.G. Davis, A.K., Dobson, A., Driscoll, M.J.L., Hartup, B.K., Hawley, D.M., Hochachka, W.M., Hosseini, P.R., Jennelle, C.S., Kollias, G.V., Ley, D.H., Swarthout, E.C.H. & Sydenstricker, K.V. (2005) Dynamics of a novel pathogen in an avian host: Mycoplasmal conjunctivitis in house finches. Acta Tropica, 94, 7793.
  • Faustino, C.R., Jennelle, C.S., Connolly, V., Davis, A.K., Swarthout, E.C., Dhondt, A.A. & Cooch, E.G. (2004) Infection dynamics in a house finch population: seasonal variation in survival, encounter, and transmission rate. Journal of Animal Ecology, 73, 651669.
  • Fujiwara, M. & Caswell, H. (2002) Estimating population projection matrices from multi-stage mark–recapture data. Ecology, 83, 32573265.
  • Gibson, G.J. & Renshaw, E. (1998) Estimating parameters in stochastic compartmental models using Markov chain methods. IMA Journal of Mathematics Applied in Medicine and Biology, 15, 1940.
  • Hestbeck, J.B., Nichols, J.D. & Malecki, R.A. (1991) Estimates of movement and site fidelity using mark–resight data of wintering Canada geese. Ecology, 72, 523533.
  • Höhle, M., Jørgensen, E. & O’Neill, P.D. (2005) Inference in disease transmission experiments by using stochastic epidemic models. Journal of the Royal Statistical Society, Series C, 54, 349366.
  • Jennelle, C.S., Cooch, E.G. Conroy, M.J. & Senar, J.C. (2007) State-specific detection probabilities and disease prevalence. Ecological Applications, 17, 154167.
  • Kendall, W.L. (2008) One size does not fit all: adapting mark–recapture and occupancy models for state uncertainty. Environmental and Ecological Statistics, in press.
  • Kendall, W.L., Hines, J.E. & Nichols, J.D. (2003) Adjusting multistate capture–recapture models for misclassification bias: manatee breeding proportions. Ecology, 84, 10581066.
  • Kendall, W.L., Langtimm, C.A., Beck, C.A. & Runge, M.C. (2004) Capture–recapture analysis for estimating manatee reproductive rates. Marine Mammal Science, 20, 424437.
  • Lebreton, J-D. & Pradel, R. (2002) Multistate recapture models: modelling incomplete individual histories. Journal of Applied Statistics, 29, 353369.
  • Lebreton, J-D., Almeras, T. & Pradel, R. (1999) Competing events, mixtures of information and multistrata recapture models. Bird Study, 46, 3946.
  • Nichols, J.D. & Kendall, W.L. (1995) The use of multi-state capture–recapture models to address questions in evolutionary ecology. Journal of Applied Statistics, 22, 835846.
  • Nichols, J.D., Sauer, J.R., Pollock, K.H. & Hestbeck, J.B. (1992) Estimating transition probabilities for stage-based population projection matrices using capture–recapture data. Ecology, 73, 306312.
  • Nichols, J.D., Kendall, W.L., Hines, J.E. & Spendelow, J.A. (2004) Estimation of sex-specific survival from capture–recapture data when sex is not always known. Ecology, 85, 31923201.
  • O’Neill, P.D. & Roberts, G.O. (1999) Bayesian inference for partially observed stochastic epidemics. Journal of the Royal Statistical Society, Series A, 162, 121129.
  • Pradel, R. (2005) Multievent: an extension of multistate capture–recapture models to uncertain states. Biometrics, 61, 442447.
  • Pradel, R. (2008; in press) The stakes of capture–recapture models with state uncertainty. Environmental and Ecological Statistics.
  • Pradel, R., Maurin-Bernier, L., Gimenez, O., Genovart, M., Choquet, R. & Oro, D. (2008) Estimation of sex-specific survival with uncertainty in sex assessment. The Canadian Journal of Statistics, 36, 2942.
  • Royle, J.A. & Link, W.A. (2005) A general class of multinomial mixture models for anuran calling survey data. Ecology, 86, 25052512.
  • Royle, J.A. & Link, W.A. (2006) Generalized site occupancy models allowing for false positive and false negative errors. Ecology, 87, 835841.
  • Runge, J.P., Hines, J.E. & Nichols, J.D. (2007) Estimating species-specific survival and movement when species identification is uncertain. Ecology, 88, 282288.
  • Schwarz, C.J., Schweigert, J.F. & Arnason, A.N. (1993) Estimating migration rates using tag-recovery data. Biometrics, 49, 177193.
  • Senar, J.C. & Conroy, M.J. (2004) Multi-state analysis of the impacts of avian pox on a population of serins (Serinus serinus): the importance of estimating recapture rates. Animal Biodiversity and Conservation, 27, 133146.
  • Williams, B.K., Nichols, J.D. & Conroy, M.J. (2002) Analysis and Management of Animal Populations. Academic Press, San Diego, CA, USA.