Modelling the future distribution of the amphibian chytrid fungus: the influence of climate and human-associated factors

Authors


  • Conflicts of interest: No conflicts declared

Correspondence author. E-mail: jasonrohr@gmail.com

Summary

1. Many of the global losses of amphibians are believed to be caused by the chytrid fungus, Batrachochytrium dendrobatidis (Bd). Hence, determining its present and future environmental suitability should help to inform management and surveillance of this pathogen and curtail the amphibian biodiversity crisis.

2. In this issue of Journal of Applied Ecology, Murray et al. (2010) offer an important step in this direction by providing a species distribution model that projects the environmental suitability of Bd across Australia and predicts locations of chytridiomycosis and amphibian declines. Batrachochytrium dendrobatidis presence was predicted by diurnal temperature range (a measure of temperature variability) and mean precipitation. Human population density, a positive predictor of Bd, accounted for the most variation when removed from the statistical model.

3. This work represents an invaluable case study and has great potential for managing chytridiomycosis and associated amphibian declines, but its value in practice will depend on how well managers understand the limitations of species distribution models.

4. Synthesis and applications. To improve the management of chytridiomycosis, amphibian-chytrid research should attempt to understand how humans may affect the distribution of Bd, how climatic means and variances affect Bd transmission, how much variation in the distribution of Bd is unique to and shared among climate, human, and other factors, whether human-related factors and climate statistically interact, and how these potentially correlated factors and any interactions affect the predictability of species distribution models. In response to the swift spread of Bd and our rapidly changing planet, we encourage the application of Bd distribution models to other regions of the globe and predictions of Bd’s distribution under future climate change scenarios.

Introduction

Alarmingly, almost a third of amphibian species are considered threatened and more than 43% are experiencing some form of population decline (Stuart et al. 2004). Many of these amphibian losses are believed to be driven by the disease chytridiomycosis, caused by the pathogenic chytrid fungus Batrachochytrium dendrobatidis (Bd; Wake & Vredenburg 2008). Given that Bd may be spreading and/or emerging (Rohr et al. 2008; James et al. 2009) and that climate is changing, one of the priorities for managing this devastating pathogen is to determine its present and future environmental limitations at global and local scales. If this can be done accurately, it might help to predict the future distribution of Bd, identify where Bd poses the greatest future threats, and facilitate prioritization of species and locations for monitoring and management given scarce conservation funds. In this issue of Journal of Applied Ecology, Murray et al. (2010) offer an important step in this direction by providing a species distribution model that projects the environmental suitability for Bd across the entire continent of Australia.

Murray et al. (2010) base their models on an impressive spatiotemporal database consisting of 821 sites in Australia where 115 amphibian species and 10 183 individuals were tested for Bd from 1956–2007. Previous large-scale databases associated with Bd-related declines have proven to be useful in understanding the biology of this pathogen (Lips et al. 2008; Rohr et al. 2008; Rohr & Raffel 2010), and there is little question that this new database will also be valuable for addressing the amphibian biodiversity crisis and questions of disease ecology in general. From 19 climatic variables, as well as information on distance to water, vegetation type, and human population density, Murray et al. (2010) identified annual precipitation and diurnal temperature range (a measure of temperature variation) as important predictors of Bd presence. Moisture has been well established as a crucial factor for Bd persistence (Johnson et al. 2003; Berger et al. 2004). Evidence for the importance of diurnal temperature range is interesting in light of a recent study that revealed that temperature variability, in general, and diurnal temperature range specifically, might drive amphibian declines putatively caused by chytridiomycosis (Rohr & Raffel 2010).

Using recent advances in bioclimatic envelope modelling (Phillips, Anderson & Schapire 2006), Murray et al. (2010) estimated the range of environments suitable for Bd (its bioclimatic envelope) and then predicted its minimum potential geographic distribution across Australia. Importantly, sites with documented amphibian declines associated with severe chytridiomycosis had high Bd environmental suitability values, and environmental suitability values specific to each of Australia’s 196 amphibian species were significant positive predictors of whether species experienced declines (even after controlling for species’ range sizes). Hence, the developed species distribution model appears to be capable of predicting locations of high risk for both chytridiomycosis and amphibian losses. Some caution should be used interpreting these correlations, however, because sampling for Bd was likely biased towards locations where amphibians were in decline and/or showing signs of chytridiomycosis, so environmental suitability estimates might also be biased toward these locations. Finally, in an effort to facilitate and target management and monitoring, Murray et al. (2010) importantly identified amphibian species that have high environmental suitability scores for Bd and regions of Australia that have both high suitability scores and high amphibian species richness and endemism.

Although this work clearly has great potential for managing chytridiomycosis and associated amphibian declines, its value in practice will depend on how well managers understand the limitations of bioclimatic envelope models (BEMs) and how well the assumptions of these models were met by this study. BEMs are strictly correlational and do not directly model abiotic and biotic interactions, dispersal, or evolution, all of which can be important for predicting the effects of climate change on biodiversity (Davis et al. 1998; Rohr & Madison 2003; Araujo & Luoto 2007; Harmon, Moran & Ives 2009). Further, BEMs often have considerable uncertainty despite systematically overestimating model fits during model validation (Hampe 2004). The over-fitting occurs because BEMs generally do not account for spatial autocorrelation among their data (a pseudoreplication issue; Segurado, Araujo & Kunin 2006). Finally, the results of BEMs can be quite sensitive to the model parameterization and model selection procedures that were implemented (Araujo & Guisan 2006). Ideally, several parameterization and selection procedures should be used to evaluate the robustness of the BEM results. Nevertheless, BEMs provide a useful first approximation and working hypothesis when identifying a species’ future distribution (Pearson & Dawson 2003). These approximations should be improved upon with additional data and adaptive management approaches, as advocated by Murray et al. (2010).

Murray et al. (2010) also offer some important insights into how their model might be improved upon. Intriguingly, Murray et al. (2010) discovered that human population density (HPD) was a positive predictor of the presence of Bd, with Bd almost exclusively being found near port cities and the highways connecting them (their Fig. S1). Furthermore, the removal of HPD from their statistical model resulted in the greatest change in variation relative to all other predictors (their Fig. S8), indicating that HPD accounted for the greatest unique variation in the distribution of Bd. While it is possible that the correlation is driven by humans and Bd simply preferring the same climate, this seems unlikely given that the effect of humans was still evident after accounting for variation due to the climatic factors. Hence, the relationship between HPD and Bd presence suggests that, in addition to climate, human-associated factors might affect the distribution of this pathogen. This is not surprising given that humans are believed to be a major dispersal agent for Bd (Skerratt et al. 2007), a hypothesis that received support from two molecular studies concluding that the distribution of Bd was consistent with human-assisted migration (Morgan et al. 2007; James et al. 2009), and from a survey in Oregon and Northern California revealing that detectability of Bd increased markedly with human influence on the landscape (Adams et al. 2010).

However, if humans are regularly introducing Bd into areas of low environmental suitability, this could violate the underlying assumption of the BEM, that the climatic conditions where Bd is presently found will either match the conditions of its future range or at least be adequate surrogates for the factors that dictate its future distribution (Pearson & Dawson 2003). Research on source-sink dynamics and metapopulations, and more recently neutral theory, has shown that organisms can often appear in suboptimal habitats when immigration is high (Davis et al. 1998; Hanski 1998; Hubbell 2005). The fact that Bd is predominantly found in and around coastal cities might further exacerbate this concern because the coastline essentially functions as a giant drift fence, forcing dispersal along and away from the coast. If there are multiple introductions at nearby port cities and crossing waves of dispersal along the coast, then BEMs will provide greater weight to these coastal regions, even if they do not represent optimal Bd conditions. It remains to be seen how much of a concern this is to the reliability of Murray et al.’s (2010) predictions, but the potential influence of dispersal and human-associated factors point to some major challenges for future BEMs and amphibian-chytrid work.

Future research on BEMs should evaluate whether accounting for spatial autocorrelation using traditional approaches adequately accounts for dispersal barriers and limitations and spread from known or presumed introduction sites. This is particularly important given that the goal of BEMs, in many cases, is to model invasive species, which are often introduced at locations of high human population density, such as at cities with ports and airports. Amphibian-chytrid research should attempt to understand how humans affect the distribution of Bd; how much variation in the distribution of Bd is unique to and shared among climate, human, and other factors; whether human-related factors and climate interact statistically; and how these correlated factors and any interactions affect the predictability of BEMs. Finally, amphibian-chytrid research should better validate BEMs by determining how accurately they predict the spread of Bd.

Despite their limitations, BEMs represent an important tool for predicting the future distributions of species and Murray et al. (2010) provide an invaluable case study that should guide others in applying these tools worldwide. Undoubtedly, the reliability of these models for predicting the distribution of Bd will improve with a better understanding of the factors that dictate the persistence and transmission of this pathogen. In response to the swift spread of Bd (Skerratt et al. 2007; Rohr et al. 2008) and our rapidly changing planet, we encourage the application of BEMs to other regions of the globe and the use of BEMs and ensemble climate models to predict the distribution of Bd under future climate change scenarios (e.g. Lawler et al. 2009). Global climate change is creating a climatically more variable world (Raisanen 2002) and thus research must consider how changes to both the mean and variance of climatic variables affect Bd-amphibian interactions and species interactions, in general (Raffel et al. 2006; Rohr & Raffel 2010). These proposed efforts should help inform management and surveillance, and will hopefully curtail our amphibian biodiversity crisis.

Acknowledgements

We thank Marc Cadotte for providing us with the opportunity to write this commentary and for discussing with us the reviewers’ praise and comments on this paper. Funds were provided by a National Science Foundation (DEB 0516227) grant to J.R.R., US Department of Agriculture (NRI 2006-01370, 2009-35102-05043) grants to J.R.R., and a US Environmental Protection Agency STAR grant to J.R.R. and T.R.R. (R833835).

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