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References

  • Amano, T. & Yamaura, Y. (2007) Ecological and life-history traits related to range contractions among breeding birds in Japan. Biological Conservation, 137, 271282.
  • Askins, R.A. (2001) Sustaining biological diversity in early successional communities: the challenge of managing unpopular habitats. Wildlife Society Bulletin, 29, 407412.
  • Bibby, C.J. & Buckland, S.T. (1987) Bias of bird census results due to detectability varying with habitat. Acta Oecologica, 8, 103112.
  • Brawn, J.D., Robinson, S.K. & Thompson, F.R. III. (2001) The role of disturbance in the ecology and conservation of birds. Annual Review of Ecology and Systematics, 32, 251276.
  • Doherty, P.F.J. & Grubb, T.C.J. (2002) Survivorship of permanent-resident birds in a fragmented forested landscape. Ecology, 83, 844857.
  • Donner, D.M., Ribic, C.A. & Probst, J.R. (2010) Patch dynamics and the timing of colonization-abandonment events by male Kirtland’s Warblers in an early succession habitat. Biological Conservation, 143, 11591167.
  • Dorazio, R.M. & Royle, J.A. (2005) Estimating size and composition of biological communities by modeling the occurrence of species. Journal of the American Statistical Association, 100, 389398.
  • Dorazio, R.M., Royle, J.A., Söderström, B. & Glimskär, A. (2006) Estimating species richness and accumulation by modeling species occurrence and detectability. Ecology, 87, 842854.
  • Ellison, A.M., Bank, M.S., Clinton, B.D., Colburn, E.A., Elliott, K., Fort, C.R. & Foster, D.R. (2005) Loss of foundation species: consequences for the structure and dynamics of forested ecosystems. Frontiers in Ecology and Environment, 3, 479486.
  • Gaston, K.J. & Fuller, R.A. (2008) Commonness, population depletion and conservation biology. Trends in Ecology and Evolution, 23, 1419.
  • Gelman, A. (2006) Prior distributions for variance parameters in hierarchical models. Bayesian Analysis, 1, 513534.
  • Gelman, A. & Hill, J. (2007) Data Analysis Using Regression and Multilevel/hierarchical Models. Cambridge University Press, Cambridge.
  • Greenberg, R. & Marra, P.P. (2005) Birds of Two Worlds: The Ecology and Evolution of Migration. Johns Hopkins University Press, Baltimore.
  • Haney, A., Apfelbaum, S. & Burris, J.M. (2009) Thirty years of post-fire succession in a southern boreal forest bird community. American Midland Naturalist, 159, 421433.
  • Hanski, I. (1999) Metapopulation Ecology. Oxford University Press, Oxford.
  • He, F. & Gaston, K.J. (2000) Estimating species abundance from occurrence. American Naturalist, 156, 553559.
  • Hillebrand, H. & Matthiessen, B. (2009) Biodiversity in a complex world: consolidation and progress in functional biodiversity resarch. Ecology Letters, 12, 14051419.
  • Ibaraki Branch (2008) Report on the Distribution of Wild Birds and Mammals in Ibaraki Prefecture (2006, 2007). Ibaraki Branch, Wild Bird Society of Japan, Mito.
  • Jacquet, K. & Prodon, R. (2009) Measuring the postfire resilience of a bird–vegetation system: a 28-year study in a Mediterranean oak woodland. Oecologia, 161, 801811.
  • Johnson, E.A. & Miyanishi, K. (2008) Testing the assumptions of chronosequences in succession. Ecology Letters, 11, 419431.
  • Johnson, M.D., Sherry, T.W., Holmes, R.T. & Marra, P.P. (2006) Assessing habitat quality for a migratory songbird wintering in natural and agricultural habitats. Conservation Biology, 20, 14331444.
  • Joseph, L.N., Field, S.A., Wilcox, C. & Possingham, H.P. (2006) Presence-absence versus abundance data for monitoring threatened species. Conservation Biology, 20, 16791687.
  • Kéry, M. (2008) Estimating abundance from bird counts: binomial mixture models uncover complex covariate relationships. Auk, 125, 336345.
  • Kéry, M. (2010) Introduction to WinBUGS for Ecologists: A Bayesian Approach to Regression, ANOVA, Mixed Models and Related Analysis. Academic Press, San Diego.
  • Kéry, M. & Royle, J.A. (2008) Hierarchical Bayes estimation of species richness and occupancy in spatially replicated surveys. Journal of Applied Ecology, 45, 589598.
  • Kéry, M. & Royle, J.A. (2009) Inference about species richness and community structure using species-specific occupancy models in the national Swiss breeding bird survey MHB. Modeling Demographic Processes in Marked Populations (eds D.L. Thomson, E.G. Cooch & M.J. Conroy), pp. 639656. Springer, New York.
  • Kéry, M., Royle, J.A. & Schmid, H. (2005) Modeling avian abundance from replicated counts using binomial mixture models. Ecological Applications, 15, 14501461.
  • Kéry, M., Dorazio, R.M., Soldaat, L., van Strien, A., Zuiderwijk, A. & Royle, J.A. (2009) Trend estimation in populations with imperfect detection. Journal of Applied Ecology, 46, 11631172.
  • Krebs, C.J. (2009) Ecology: The Experimental Analysis of Distribution and Abundance. Pearson Education, Chollerstrasse.
  • Lande, R. (1996) Statistics and partitioning of species diversity, and similarity among multiple communities. Oikos, 76, 513.
  • Legendre, P. & Legendre, L. (1998) Numerical Ecology, 2nd edn. Elsevier, Amsterdam.
  • Lindenmayer, D.B. & Franklin, J.F. (2002) Conserving Forest Biodiversity: A?Comprehensive Multiscaled Approach. Island Press, Washington, DC.
  • Link, W.A. (1999) Modeling pattern in collections of parameters. Journal of Wildlife Management, 63, 10171027.
  • Lunn, D.J., Thomas, A., Best, N. & Spiegelhalter, D. (2000) WinBUGS – a Bayesian modelling framework: concepts, structure, and extensibility. Statistics and Computing, 10, 325337.
  • MacKenzie, D.I., Nichols, J.D., Royle, J.A., Pollock, K.H., Bailey, L.L. & Hines, J.E. (2006) Occupancy Estimation and Modeling: Inferring Patterns and Dynamics of Species Occurrence. Academic Press, Amsterdam.
  • Marsh, D.M. & Trenham, P.C. (2008) Current trends in plant and animal population monitoring. Conservation Biology, 22, 647655.
  • Mazerolle, M.J., Desrochers, A. & Rochefort, L. (2005) Landscape characteristics influence pond occupancy by frogs after accounting for detectability. Ecological Applications, 15, 824834.
  • McCarthy, M.A. (2007) Bayesian Methods for Ecology. Cambridge University Press, Cambridge.
  • Pollock, J.F. (2006) Detecting population declines over large areas with presence-absence, time-to-encounter, and count survey methods. Conservation Biology, 20, 882892.
  • Royle, J.A. & Dorazio, R.M. (2008) Hierarchical Modeling and Inference in Ecology: The Analysis of Data From Populations, Metapopulations and Communities. Academic Press, Amsterdam.
  • Royle, J.A., Dorazio, R.M. & Link, W.A. (2007) Analysis of multinomial models with unknown index using data augmentation. Journal of Computational and Graphical Statistics, 16, 6785.
  • Royle, J.A. & Nichols, J.D. (2003) Estimating abundance from repeated presence-absence data or point counts. Ecology, 84, 777790.
  • Royle, J.A., Kéry, M., Gautier, R. & Schmid, H. (2007) Hierarchical spatial models of abundance and occurrence from imperfect survey data. Ecological Monographs, 77, 465481.
  • Russell, R.E., Royle, J.A., Saab, V.A., Lehmkuhl, J.F., Block, W.M. & Sauer, J.R. (2009) Modeling the effects of environmental disturbance on wildlife communities: avian responses to prescribed fire. Ecological Applications, 19, 12531263.
  • Sauer, J.R. & Link, W.A. (2002) Hierarchical modeling of population stability and species group attributes from survey data. Ecology, 86, 17431751.
  • Schieck, J. (1997) Biased detection of bird vocalizations affects comparisons of bird abundance among forested habitats. Condor, 99, 179190.
  • Simberloff, D. & Dayan, T. (1991) The guild concept and the structure of ecological communities. Annual Review of Ecology and Systematics, 22, 115143.
  • Smucker, K.M., Hutto, R.L. & Steele, B.M. (2005) Changes in bird abundance after wildfire: importance of fire severity and time since fire. Ecological Applications, 15, 15351549.
  • Spiegelhalter, D., Thomas, A., Best, N. & Lunn, D. (2003) WinBUGS User Manual. Ver. 1.4. MRC Biostatistics Unit, Institute of Public Health, Cambridge.
  • Sturtz, S., Ligges, U. & Gelman, A. (2005) R2WinBUGS: a package for running WinBUGS from R. Journal of Statistical Software, 12, 116.
  • Thompson, W.L. (2002) Towards reliable bird surveys: accounting for individuals present but not detected. Auk, 119, 1825.
  • Turner, M.G., Gardner, R.H. & O’Neill, R.V. (2001) Landscape Ecology in Theory and Practice: Pattern and Process. Springer, New York.
  • Tyre, A.J., Tenhumberg, B., Field, S.A., Niejalke, D., Parris, K. & Possingham, H.P. (2003) Improving precision and reducing bias in biological surveys: estimating false-negative error rates. Ecological Applications, 13, 17901801.
  • Veech, J.A., Summerville, K.S., Crist, T.O. & Gering, J.C. (2002) The additive partitioning of species diversity: recent revival of an old idea. Oikos, 99, 39.
  • Violle, C., Navas, M.-L., Vile, D., Kazakou, E., Fortunel, C., Hummel, I. & Garnier, E. (2007) Let the concept of trait be functional! Oikos, 116, 882892.
  • Williams, B.K., Nichols, J.D. & Conroy, M.J. (2001) Analysis and Management of Animal Populations. Academic Press, San Diego.
  • Yamaura, Y., Amano, T., Koizumi, T., Mitsuda, Y., Taki, H. & Okabe, K. (2009) Does land-use change affect biodiversity dynamics at a macroecological scale? A case study of birds over the past 20 years in Japan. Animal Conservation, 12, 110119.
  • Yoccoz, N.G., Nichols, J.D. & Boulinier, T. (2001) Monitoring of biological diversity in space and time. Trends in Ecology and Evolution, 16, 446453.
  • Zipkin, E.F., DeWan, A. & Royle, J.A. (2009) Impacts of forest fragmentation on species richness: a hierarchical approach to community modelling. Journal of Applied Ecology, 46, 815822.
  • Zipkin, E.F., Royle, J.A., Dawson, D.K. & Bates, S. (2010) Multi-species occurrence models to evaluate the effects of conservation and management actions. Biological Conservation, 143, 479484.