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Fig. S1. Classification of fish and crustacean abundance data for the (a) Macleay and (b) Clarence estuaries.

Table S1. Description of physical conditions in study areas and floodgate remediation for all study creeks.

Table S2. Mean catch per unit effort (averaged across all area by time sample) of all taxa collected from the Macleay and Clarence River estuaries, showing their abundance at each treatment (MGs, managed-gated; Cs, gated controls; and Rs, un-gated references) before (b) and after (a) floodgate opening commenced.

Table S3. Average Bray–Curtis dissimilarity (on presence-absence transformed data) values between MG1 and reference creeks (Rs) in the Macleay showing species contributing most to dissimilarity before floodgate opening (times 1–10), and again after floodgate opening (times 15–24).

Table S4. Average Bray–Curtis dissimilarity (on presence-absence transformed data) values between MG2 and reference creeks (Rs) in the Clarence showing species contributing most to dissimilarity before floodgate opening (times 1–5), and again after floodgate opening (times 7–1).

Table S5. Average Bray–Curtis dissimilarity (on presence-absence transformed data) values between MG3 and reference creeks (Rs) in the Clarence showing species contributing most to dissimilarity before floodgate opening (times 1–5), and again after floodgate opening (times 7–9 and 10–11).

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