SEARCH

SEARCH BY CITATION

References

  • Altekar, G., Dwarkadas, S., Huelsenbeck, J. and Ronquist, F. (2004) Parallel metropolis coupled Markov chain Monte Carlo for Bayesian phylogenetic inference. Bioinformatics 20, 407415.
  • Ballio, A., Barra, D., Bossa, F., Collina, A., Grgurina, I., Marino, G., Moneti, G., Paci, M. et al. (1991) Syringopeptins, new phytotoxic lipodepsipeptides of Pseudomonas syringae pv. syringae. FEBS Lett 291, 109112.
  • Barrow, W.W. and Brennan, P.J. (1982) Isolation in high frequency of rough variants of Mycobacterium intracellulare lacking C-mycoside glycopeptidolipid antigens. J Bacteriol 150, 381384.
  • Belisle, J.T. and Sonnenberg, M.G. (1998) Isolation of genomic DNA from Mycobacteria. In Mycobacteria Protocols eds Stoker, N.G. and Parish, T. pp. 3144. Totowa, NJ: Humana Press.
  • Beverly, S.M. (1988) Characterization of the ‘unusual’ mobility of large circular DNAs in pulsed field gradient electrophoresis. Nucleic Acids Res 16, 925939.
  • Bidwai, A.P., Bachmann, R.C. and Takemoto, J.Y. (1987) Mechanism of action of Pseudomonas syringae phytotoxin, syringomycin. Plant Physiol 83, 3943.
  • Brezna, B., Khan, A. and Cerniglia, C.E. (2003) Molecular characterization of dioxygenases from polycyclic aromatic hydrocarbon-degrading Mycobacterium spp. FEMS Microbiol Lett 223, 177183.
  • Coleman, N.V. and Spain, J.C. (2003) Distribution of the coenzyme M pathway of epoxide metabolism among ethene- and vinyl chloride-degrading mycobacterium strains. Appl Environ Microbiol 69, 60416046.
  • Conville, P.S. and Witebsky, F.G. (1998) Variables affecting results of sodium chloride tolerance test for identification of rapidly growing mycobacteria. J Clin Microbiol 36, 15551559.
  • Conville, P.S. and Witebsky, F.G. (2001) Lack of usefulness of carbon utilization tests for identification of Mycobacterium mucogenicum. J Clin Microbiol 39, 27252728.
  • Dandie, C.E., Thomas, S.M., Bentham, R.H. and McClure, N.C. (2004) Physiological characterization of Mycobacterium sp. strain 1B isolated from a bacterial culture able to degrade high-molecular-weight polycyclic aromatic hydrocarbons. J Appl Microbiol 97, 246255.
  • Dauger, D.E. (2001) Pooch Application: Parallel OperatiOn and Control Heuristic Application. Dauger Research ( http://www.daugerresearch.com), Huntington Beach, CA.
  • Davies, P.D. and Yew, W.W. (2003) Recent developments in the treatment of tuberculosis. Expert Opin Investig Drugs 12, 12971312.
  • Dean-Ross, D. and Cerniglia, C.E. (1996) Degradation of pyrene by Mycobacterium flavescens. Appl Microbiol Biotechnol 46, 307312.
  • Del Sal, G., Manfioletti, G. and Schneider, G. (1989) The CTAB-DNA precipitation method: a common mini-scale preparation of template DNA from phagmids, phages, or plasmids suitable for sequencing. Bio Techniq 7, 514519.
  • Fukuchi, N., Isogai, A., Nakayama, J., Takayama, S., Yamashita, S., Suyama, K., Takemoto, J.Y. and Suzuki, A. (1992) Structure and stereochemistry of three phytotoxins, syringomycin, syringotoxin and syringostatin, produced by Pseudomonas syringae pv. syringae. J Chem Soc Perkin Trans 1, 11491157.
  • Gonzalez-y-Merchand, J.A., Colston, M.J. and Cox, R.A. (1999) Effects of growth conditions on expression of mycobacterial murA and tyrS genes and contributions of their transcripts to precursor rRNA synthesis. J Bacteriol 181, 46174627.
  • Grgurina, I., Bensaci, M., Pocsfalvi, G., Mannina, L., Cruciani, O., Fiore, A., Fogliano, V., Sorensen, K.N. et al. (2005) Novel cyclic lipodepsipeptide from Pseudomonas syringae pv. lachrymans strain 508 and syringopeptin antimicrobial activities. Antimicrob Agents Chemother 49, 50375045.
  • Hall, K., Miller, C.D., Sorensen, D.L., Anderson, A.J. and Sims, R.C. (2005) Development of a catabolically significant genetic probe for polycyclic aromatic hydrocarbon-degrading Mycobacteria in soil. Biodegradation 16, 475484.
  • Heitkamp, M.A., Franklin, W. and Cerniglia, C.E. (1988) Microbial metabolism of polycyclic aromatic hydrocarbons: isolation and characterization of a pyrene-degrading bacterium. Appl Environ Microbiol 54, 25492555.
  • Hughes, V.M., Stevenson, K. and Sharp, J.M. (2001) Improved preparation of high molecular weight DNA for pulsed-field gel electrophoresis from mycobacteria. J Microbiol Methods 44, 209215.
  • Isogai, A., Iguchi, H., Nakayama, J., Kusai, A., Takemoto, J.Y. and Suzuki, A. (1995) Structural analysis of new syringopeptins by tandem mass spectrometry. Biosci Biotechnol Biochem 59, 13741376.
  • Jarlier, V. and Nikaido, H. (1994) Mycobacterial cell wall: structure and role in natural resistance to antibiotics. FEMS Microbiol Lett 123, 1118.
  • Kim, Y.H., Engesser, K.H. and Cerniglia, C.E. (2005a) Numerical and ribosomal RNA gene sequence analysis of polycyclic aromatic hydrobarbon-degrading mycobacteria. Microbiol Ecol 50, 110119.
  • Kim, Y.H., Freeman, J.P., Moody, J.D., Engesser, K.H. and Cerniglia, C.E. (2005b) Effects of pH on the degradation of phenanthrene and pyrene by Mycobacterium vanbaalenii PYR-1. Appl Microbiol Biotechnol 67, 275285.
  • Manzoor, S.E., Lambert, P.A., Griffiths, P.A., Gill, M.J. and Fraise, A.P. (1999) Reduced glutaraldehyde susceptibility in Mycobacterium chelonae associated with altered cell wall polysaccharides. J Antimicrob Chemother 43, 759765.
  • Marsollier, L., Stinear, T., Aubry, J., Saint André, J.P., Robert, R., Legras, P., Manceau, A.L. et al. (2004) Aquatic plants stimulate the growth of and biofilm formation by Mycobacterium ulcerans in axenic culture and harbor these bacteria in the environment. Appl Environ Microbiol 70, 10971103.
  • Miller, C.D., Hall, K., Liang, Y.N., Nieman, K., Sorensen, D., Issa, B., Anderson, A.J. and Sims, R.C. (2004) Isolation and characterization of polycyclic aromatic hydrocarbon-degrading mycobacterium isolates from soil. Microb Ecol 48, 230238.
  • Nylander, J.A.A. (2004) MrModeltest 2.0. [URL] http://www.ebc.uu.se/systzoo/staff/nylander.html.
  • Picardeau, M. and Vincent, V. (1997) Characterization of large linear plasmids in mycobacteria. J Bacteriol 179, 27532756.
  • Rambaut, A. (2004) Se-Al: Sequence Alignment Editor v2.0a11. University of Oxford ( http://evolve.zoo.ox.ac.uk), Oxford, UK.
  • Ronquist, F. and Huelsenbeck, J. (2003) MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 19, 15721574.
  • Segre, A., Bachmann, R.C., Ballio, A., Bossa, F., Grgurina, I., Iacobellis, N.S., Marino, G., Pucci, M. et al. (1989) The structure of syringomycins A1, E and G. FEBS Lett 255, 2731.
  • Swofford, D.L. (2002) PAUP*: Phylogenetic Analysis using Parsimony (*and Other Methods). Sinauer Associates, Sunderland, MA.
  • Vaerewijck, M.J., Huys, G., Palomino, J.C., Swings, J. and Portaels, F. (2005) Mycobacteria in drinking water distribution systems: ecology and significance for human health. FEMS Microbiol Rev 29, 911934.
  • Woods, G.L. and Washington, J.A. (1995) Antibacterial susceptibility tests: dilution and disk-diffusion methods. In Manual of Clinical Microbiology, 6th edn. eds Murray, P.R., Baron, E.J., Pfaller, M.A., Tenover, F.C. and Yolken, R.H. pp. 13271341. Washington, DC: American Society for Microbiology.
  • Yildirim, A., Mavi, A. and Kara, A.A. (2001) Determination of antioxidant and antimicrobial activities of Rumex crispus L. extracts. J Agric Food Chem 49, 40834089.