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Appendix S1 Selection of cpSSR loci.

Table S1 Haplotypes observed in the Pinus mugo species complex.

Table S2 Haplotypes observed in Pinus sylvestris.

Table S3Pinus mugo s.l. sequencing of cpSSR Pt41093.

Table S4 Pairwise FST-values between populations of the Pinus mugo species complex.

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