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References

  • Arnaud-Haond, S., Duarte, C.M., Alberto, F. & Serrão, E.A. (2007) Standardizing methods to address clonality in population studies. Molecular Ecology, 16, 51155139.
  • Auge, H., Neuffer, B., Erlinghagen, F., Grupe, R. & Brandl, R. (2001) Demographic and random amplified polymorphic DNA analyses reveal high levels of genetic diversity in a clonal violet. Molecular Ecology, 10, 18111819.
  • Barrett, S.C.H., Eckert, C.G. & Husband, B.C. (1993) Evolutionary processes in aquatic plant populations. Aquatic Botany, 44, 105145.
  • Beatty, G.E., McEvoy, P.M., Sweeney, O. & Provan, J. (2008) Range-edge effects promote clonal growth in peripheral populations of the one-sided wintergreen Orthilia secunda. Diversity and Distributions, 14, 546555.
  • Benham, J., Jeung, J., Jasieniuk, M., Kanazin, V. & Blake, T. (1999) Genographer: a graphical tool for automated fluorescent AFLP and microsatellite analysis. Journal of Agricultural Genomics, 4 (available at: http://wheat.pw.usda.gov/jag/papers99/paper399/indexp399.html)
  • Berry, F. & Kress, W.J. (1991) Heliconia: An Identification Guide. Smithsonian Institution Press, Wahington DC, USA.
  • Chen, Y.Y., Yang, W., Li, W., Li, Z.Z. & Huang, H.W. (2009) High allozyme diversity and unidirectional linear migration patterns within a population of tetraploid Isoetes sinensis, a rare and endangered pteridophyte. Aquatic Botany, 90, 5258.
  • Corander, J., Sirén, J. & Arjas, E. (2008) Spatial modelling of genetic population structure. Computational Statistics, 23, 111129.
  • Cuartas-Hernández, S. & Núñez-Farfan, J. (2006) The genetic structure of the tropical understory herb Dieffenbachia seguine L. before and after forest fragmentation. Evolutionary Ecology Research, 8, 10611075.
  • De la Torre, A., Lopez, C., Yglesias, E. & Cornelius, J.P. (2008) Genetic (AFLP) diversity of nine Cedrela odorata populations in Madre de Dios, southern Peruvian Amazon. Forest Ecology and Management, 255, 334339.
  • Dorken, M.E. & Eckert, C.G. (2001) Severely reduced sexual reproduction in northern populations of a clonal plant, Decodon verticillatus (Lythraceae). Journal of Ecology, 89, 339350.
  • Douhovnikoff, V. & Dodd, R.S. (2003) Intra-clonal variation and a similarity threshold for identification of clones: application to Salix exigua using AFLP molecular markers. Theoretical and Applied Genetics, 106, 13071315.
  • Eckert, C.G. (2001) The loss of sex in clonal plants. Evolutionary Ecology, 15, 501520.
  • Ehrich, D. (2006) AFLPDAT: a collection of R functions for convenient handling of AFLP data. Molecular Ecology Notes, 6, 603604.
  • Ehrlén, J. & Lehtilä, K. (2002) How perennial are perennial plants? Oikos, 98, 308322.
  • Eriksson, O. (1996) Regional dynamics of plants: a review of evidence for remnant, source-sink and metapopulations. Oikos, 77, 248258.
  • Excoffier, L., Laval, G. & Schneider, S. (2005) Arlequin ver. 3.0: an integrated software package for population genetics data analysis. Evolutionary Bioinformatics Online, 1, 4750.
  • Fér, T. & Hroudová, Z. (2008) Detecting dispersal of Nuphar lutea in river corridors using microsatellite markers. Freshwater Biology, 53, 14091422.
  • Foster, R.B. (1990) Long-term change in the successional forest community of the Rio Manu floodplain. Four Neotropical Rainforests (ed A.H.Gentry). pp. 565572, Yale University Press, New Haven, CT, USA.
  • Frazer, G.W., Canham, C.D. & Lertzman, K.P. (1999) Gap Light Analyzer (GLA): Imaging Software to Extract Canopy Structure and Gap Light Transmission Indices from True Color Fisheye-photographs, Version 2.0. Simon Fraser University, Burnaby, BC, and the Institute of Ecosystem Studies, Millbrook, NY, USA.
  • Goulding, M., Cañas, C., Barthem, R., Forsberg, B. & Ortega, H. (2003) Amazon Headwaters: Rivers, Wildlife, and Conservation in Southeastern Peru. Grafica Biblos S.A., Lima, Peru.
  • Hardy, O.J. & Vekemans, X. (2002) SPAGEDi: a versatile computer program to analyse spatial genetic structure at the individual or population levels. Molecular Ecology Notes, 2, 618620.
  • Hardy, O.J. (2003) Estimation of pairwise relatedness between individuals and characterization of isolation-by-distance processes using dominant genetic markers. Molecular Ecology, 12, 15771588.
  • Honnay, O. & Bossuyt, B. (2005) Prolonged clonal growth: escape route or route to extinction? Oikos, 108, 427432.
  • Honnay, O., Jacquemyn, H., Roldán-Ruiz, I. & Hermy, M. (2006) Consequences of prolonged clonal growth on local and regional genetic structure and fruiting success of the forest perennial Maianthemum bifolium. Oikos, 112, 2130.
  • Hu, L.J., Uchiyama, K., Shen, H.L. & Ide, Y. (2010) Multiple-scaled spatial genetic structures of Fraxinus mandshurica over a riparian-mountain landscape in Northeast China. Conservation Genetics, 11, 7787.
  • Hutchison, D.W. & Templeton, A.R. (1999) Correlation of pairwise genetic and geographic distance measures: inferring the relative influences of gene flow and drift on the distribution of genetic variability. Evolution, 53, 18981914.
  • Imbert, E. & Lefèvre, F. (2003) Dispersal and gene flow of Populus nigra (Salicaceae) along a dynamic river system. Journal of Ecology, 91, 447456.
  • Jacquemyn, H., Brys, R., Honnay, O., Hermy, M. & Roldan-Ruiz, I. (2005) Local forest environment largely affects below-ground growth, clonal diversity and fine-scale spatial genetic structure in the temperate deciduous forest herb Paris quadrifolia. Molecular Ecology, 14, 44794488.
  • Jacquemyn, H., Brys, R., Honnay, O., Hermy, M. & Roldan-Ruiz, I. (2006a) Sexual reproduction, clonal diversity and genetic differentiation in patchily distributed populations of the temperate forest herb Paris quadrifolia (Trilliaceae). Oecologia, 147, 434444.
  • Jacquemyn, H., Honnay, O., van Looy, K. & Breyne, P. (2006b) Spatiotemporal structure of genetic variation of a spreading plant metapopulation on dynamic riverbanks along the Meuse River. Heredity, 96, 471478.
  • Jump, A.S. & Woodward, F.I. (2003) Seed production and population density decline approaching the range-edge of Cirsium species. New Phytologist, 160, 349358.
  • King, R.T. (2003) Succession and micro-elevation effects on seedling establishment of Calophyllum brasiliense Camb. (Clusiaceae) in an Amazonian river Meander forest. Biotropica, 35, 462471.
  • Kondo, T., Nakagoshi, N. & Isagi, Y. (2009) Shaping of genetic structure along pleistocene and modern river systems in the hydrochorous riparian Azalea, Rhododendron ripense (Ericaceae). American Journal of Botany, 96, 15321543.
  • Kudoh, H., Shibaike, H., Takasu, H., Whigham, D.F. & Kawano, S. (1999) Genet structure and determinants of clonal structure in a temperate deciduous woodland herb, Uvularia perfoliata. Journal of Ecology, 87, 244257.
  • Kudoh, H. & Whigham, D.F. (2001) A genetic analysis of hydrologically dispersed seeds of Hibiscus moscheutos (Malvaceae). American Journal of Botany, 88, 588593.
  • Lemes, M.R., Gribel, R., Proctor, J. & Grattapaglia, D. (2003) Population genetic structure of mahogany (Swietenia macrophylla King, Meliaceae) across the Brazilian Amazon, based on variation at microsatellite loci: implications for conservation. Molecular Ecology, 12, 28752883.
  • Liu, Y.F., Wang, Y. & Huang, H.W. (2006) High interpopulation genetic differentiation and unidirectional linear migration patterns in Myricaria laxiflora (Tamaricaceae), an endemic riparian plant in the Three Gorges valley of the Yangtze River. American Journal of Botany, 93, 206215.
  • Lundqvist, E. & Andersson, E. (2001) Genetic diversity in populations of plants with different breeding and dispersal strategies in a free-flowing boreal river system. Hereditas, 135, 7583.
  • Lynch, M. & Milligan, B.G. (1994) Analysis of population genetic-structure with RAPD markers. Molecular Ecology, 3, 9199.
  • Matlaga, D.P. & Horvitz, C.C. (2009) Growth and survival across a gap-understory gradient: contrast in performance of sexually vs. clonally produced offspring. American Journal of Botany, 96, 439447.
  • Melendez-Ackerman, E.J., Speranza, P., Kress, W.J., Rohena, L., Toledo, E., Cortes, C., Treece, D., Gitzendanner, M., Soltis, P. & Soltis, D. (2005) Microevolutionary processes inferred from AFLP and morphological variation in Heliconia bihai (Heliconiaceae). International Journal of Plant Sciences, 166, 781794.
  • Moegenburg, S.M. (2002) Spatial and temporal variation in hydrochory in Amazonian floodplain forest. Biotropica, 34, 606612.
  • Montgomery, R.A. & Chazdon, R.L. (2002) Light gradient partitioning by tropical tree seedlings in the absence of canopy gaps. Oecologia, 131, 165174.
  • Nei, M. (1972) Genetic distance between populations. American Naturalist, 106, 283292.
  • Oksanen, J., Blanchet, F.G., Kindt, R., Legendre, P., O’Hara, R.B., Simpson, G.L., Solymos, P., Stevens, M.H.H. & Wagner, H. (2010) Vegan: Community ecology package, R package version 1.17-2 (available at: http://CRAN.R-project.org/package=vegan).
  • Pollux, B.J.A., Luteijn, A., van Groenendael, J.M. & Ouborg, N.J. (2009) Gene flow and genetic structure of the aquatic macrophyte Sparganium emersum in a linear unidirectional river. Freshwater Biology, 54, 6476.
  • R Development Core Team (2009) R: A language and environment for statistical computing, Version 2.10.1. R Foundation for Statistical Computing, Vienna, Austria.
  • Robinson, S.K. & Terborgh, J. (1990) Bird communities of the Cocha Cashu Biological Station in Amazonian Peru. Four Neotropical Rainforests (ed A.H.Gentry). pp. 199216, Yale University Press, New Haven, CT, USA.
  • Russell, J.R., Weber, J.C., Booth, A., Powell, W., Sotelo-Montes, C. & Dawson, I.K. (1999) Genetic variation of Calycophyllum spruceanum in the Peruvian Amazon Basin, revealed by amplified fragment length polymorphism (AFLP) analysis. Molecular Ecology, 8, 199204.
  • Rusterholz, H.P., Kissling, M. & Baur, B. (2009) Disturbances by human trampling alter the performance, sexual reproduction and genetic diversity in a clonal woodland herb. Perspectives in Plant Ecology, Evolution and Systematics, 11, 1729.
  • Sagers, C.L. (1993) Reproduction in Neotropical shrubs: the occurrence and some mechanism of asexuality. Ecology, 74, 615616.
  • Salo, J., Kalliola, R., Hakkinen, I., Makinen, Y., Niemela, P., Puhakka, M. & Coley, P.D. (1986) River dynamics and the diversity of Amazon lowland forest. Nature, 322, 254258.
  • Schleuning, M., Huamán, V. & Matthies, D. (2008) Flooding and canopy dynamics shape the demography of a clonal Amazon understorey herb. Journal of Ecology, 96, 10451055.
  • Schleuning, M., Huamán, V. & Matthies, D. (2009) Experimental assessment of factors limiting seedling recruitment of an Amazonian understory herb. Biotropica, 41, 5765.
  • Schleuning, M., Templin, M., Huamán, V., Vadillo, G.P., Becker, T., Durka, W., Fischer, M. & Matthies, D. (2010) Effects of inbreeding, outbreeding, and supplemental pollen on the reproduction of a hummingbird-pollinated clonal Amazonian herb. Biotropica DOI: 10.1111/j.1744-7429.2010.00663.x.
  • Schmidt, T., Arens, P., Smulders, M.J.M., Billeter, R., Liira, J., Augenstein, I. & Durka, W. (2009) Effects of landscape structure on genetic diversity of Geum urbanum L. populations in agricultural landscapes. Flora, 204, 549559.
  • Smith, P., Hogan, K.P. & Idol, J.R. (1992) Spatial and temporal patterns of light and canopy structure in a lowland tropical moist forest. Biotropica, 24, 503511.
  • Stevenson, P.R. (2007) A test of the escape and colonization hypotheses for zoochorous tree species in a Western Amazonian forest. Plant Ecology, 190, 245258.
  • Stiles, F.G. (1979) Notes on the natural history of Heliconia (Musaceae) in Costa Rica. Brenesia, 15, 151180.
  • Stiles, F.G. & Wolf, L.L. (1979) The ecology and evolution of lek mating behaviour in the long-tailed hermit hummingbird. American Ornithologists’ Union Monographs, 27, 178.
  • Svenning, J.C. (2002) Crown illumination limits the population growth rate of a neotropical understorey palm (Geonoma macrostachys, Arecaceae). Plant Ecology, 159, 185199.
  • Tero, N., Aspi, J., Siikamaki, P., Jakalaniemi, A. & Tuomi, J. (2003) Genetic structure and gene flow in a metapopulation of an endangered plant species, Silene tatarica. Molecular Ecology, 12, 20732085.
  • Vandepitte, K., Honnay, O., de Meyer, T., Jacquemyn, H. & Roldan-Ruiz, I. (2010) Patterns of sex ratio variation and genetic diversity in the dioecious forest perennial Mercurialis perennis. Plant Ecology, 206, 105114.
  • Vekemans, X., Beauwens, T., Lemaire, M. & Roldán-Ruiz, I. (2002) Data from amplified fragment length polymorphism (AFLP) markers show indication of size homoplasy and of a relationship between degree of homoplasy and fragment size. Molecular Ecology, 11, 139151.
  • Vos, P., Hogers, R., Bleeker, M., Reijans, M., Vandelee, T., Hornes, M., Frijters, A., Pot, J., Peleman, J., Kuiper, M. & Zabeau, M. (1995) AFLP - a new technique for DNA-fingerprinting. Nucleic Acids Research, 23, 44074414.
  • Watkinson, A.R. & Powell, J.C. (1993) Seedling recruitment and the maintenance of clonal diversity in plant populations – a computer simulation of Ranunculus repens. Journal of Ecology, 81, 707717.
  • Westcott, D.A. & Graham, D.L. (2000) Patterns of movement and seed dispersal of a tropical frugivore. Oecologia, 122, 249257.
  • Wright, S. (1951) The genetical structure of populations. Annals of Eugenics, 15, 323354.