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Figure S1. Expression of the activation marker CD69 within subsets of CD4pos and CD8pos T cells in bronchoalveolar lavage fluid and blood of DR3pos and DR3neg patients, determined by flow cytometry.

Figure S2. Expression of CD57 within CD4pos and CD8pos T cells in bronchoalveolar lavage fluid and blood of DR3pos and DR3neg patients, as determined by flow cytometry.

Figure S3. Comparison between T cell receptor AV2S3pos and AV2S3neg T cell subsets, using CD25/CD27/CD69 and CD57 expression, determined by flow cytometry.

Figure S4. Comparison between CD103pos and CD103neg CD4pos T cells, using CD25/CD27/CD69 expression, in bronchoalveolar lavage fluid of DR3neg patients, determined by flow cytometry.

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