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  • Arber W., Naas T., Blot M. (1994) Generation of genetic diversity by DNA rearrangements in resting bacteria. FEMS Microbiology Ecology, 15, 514.
  • Ausubel FM, Brent R., Kingston RE, Moore DD, Seidman JG, Smith JA, Struhl K. (1989) Short Protocols in Molecular Biology, John Wiley & Sons, New York , USA .
  • Busse HJ, Elbanna T., Oyaizu H., Auling G. (1992) Identification of xenobiotic-degrading isolates from the beta subclass of the Proteobacteria by a polyphasic approach including 16S rRNA partial sequencing. International Journal of Systematic Bacteriology. 42, 1926.
  • Chatfield LK, Williams PA (1986) Naturally occurring TOL plasmids in Pseudomonas strains carrying either two homologous or two non-homologous catechol, 2,3-dioxygenase genes. Journal of Bacteriology, 168, 878885.
  • Charterjee DK, Chakrabarty AM (1983) Genetic homology between independently isolated chlorobenzoate-degradative plasmids. Journal of Bacteriology, 153, 532534.
  • Dagley S., Evans WC, Ribbons DW (1960) New pathways in the oxidative metabolism ot aromatic compounds by microorganisms. Nature, 188, 560566.
  • Dagley, S. (1971) Catabotism of aromatic compounds by microorganisms. Advances in Microbial Pltysiology, 6, 146.
  • Don RH, Pemberton JM (1981) Properties of six pesticide degradation plasmids isolated from Alcaligenes eutrophus and Alcaligenes paradoxus, Journal of Bacteriology, 145, 681686.
  • Dom E., Knackmuss H-J (1978) Chemical structure and biodegrad-ability of halogenated aromatic compounds. Two catechol, 1, 2-dioxygenases from a 3-chlorobenzoate-grown pseudomonad. Biochemical Journal, 174, 7384.
  • Fetzner S., Lingens F. (1994) Bacterial dehalogenases: Biochemistry, genetics, and biotechnological applications. Microbiological Reviews, 58, 641685.
  • Frantz B., Chakrabarty AM (1987) Organization and nucleotide sequence determination of a gene cluster involved in 3-chlorobenzoate degradation. Proceedings of the National Academy of Sciences of the USA, 84, 44604464.
  • Fulthorpe RR, Wyndham RC (1989) Survival and activity of a 3-chlorobenzoate-catabolic genotype in a natural system. Applied and Environmental Microbiology, 55, 15841590.
  • Fulthorpe RR, Wyndham RC (1991) Transfer and expression of the catabolic plasmid pBRC60 in wild bacterial recipients in a freshwater ecosystem. Applied and Environmental Microbiology, 57, 15461553.
  • Fulthorpe RR, Wyndham RC (1992) Involvement of a chloroben-zoate catabolic transposon, Tn5271, in community adaptation to chlorobiphenyl, chloroaniline and, 2,4-dichlorophenoxy-acetic acid in a freshwater ecosystem. Applied and Environmental Microbiology, 58, 314325.
  • Hickey WJ, Focht DD (1990) Degradation of mono-, di-, and tri-halogenated benzoic acids by Pseudomonas aeruginosa JB2. Applied and Environmental Microbiology, 56, 38423850.
  • Hill KE, Weightman AJ, Fry JC (1992) Isolation and screening of plasmids from the epilithon which mobilize recombinant plasmid pD10. Applied and Environmental Microbiology, 58, 12921300.
  • Hope SJ, Slater JH (1995) Cryptic dehalogenase and chloroami-dase genes in Pseudomonas putida and the influence of environmental conditions on their expression. Archives of Microbiology, 163, 5764.
  • Istock CA, Duncan KE, Ferguson N., Zhou X. (1992) Sexuality in a natural population of bacteria: Bacillus subtilis challenges the clonal paradigm. Molecular Ecology, 1, 95103.
  • Ka JO, Tiedje JM (1994) Integration and excision of a, 2,4-dichlorophenoxyacetic acid-degradative plasmid in Alcaligenes paradoxus and evidence of its natural intergenic transfer. Journal of Bacteriology, 176, 52845289.
  • Kersten PJ, Chapman PJ, Dagley S. (1982) Enzymatic release of halogens or methanol from substituted protocatechuic acids. Journal of Bacteriology, 162, 693697.
  • Kersten PJ, Dagley S., Whittaker JW, Arciero DM, Lipscomb JD (1985) 2-Pyrone-4, 6-dicarboxylic acid, a catabolite of gallic acids in Pseudomonas species, Journal of Bacteriology, 152, 11541162.
  • Lange CC, Edwards AR, Orser CS (1994) Identification of two new genetic loci, pcpD and pcpR, involved in pentachlorophenol degradation in Flavobacterium sp. strain ATCC 39723. Abstracts of the American Society for Microbiology Annual Meeting, Las Vegas, USA, Q-414, p. 461.
  • Larsen N., Olsen GJ, Maidak BL, McCaughey MJ, Overbeek R., Macke TJ, Marsh TL, Woese CR (1993) The ribosomal database project. Nucleic Acids Rsearch, 21, 30213023.
  • Lenski RE, Souza V., Duong LP, Phan QG, Nguyen TNM, Bertrand KP (1994) Epistatic effects of promoter and repressor functions of the Tn10 tetracycline-resistance operon on the fitness of Escherichia coli. Molecular Ecology, 3, 127135.
  • de Ley, J. (1992) The Proteobacteria: Ribosomal RNA cistron similarities and bacterial taxonomy. In: The Prokaryotes (eds BalowsA., TrüperHG, DworkinM., HarderW., Schleifer, K-H), pp. 21112140. Springer-Verlag, New York .
  • Matin A. (1991) The molecular basis of carbon-starvation-induced general resistance in Escherichia coli. Molecular Microbiology, 5, 310.
  • Mazodier P., Davies J. (1991) Gene transfer between distantly related bacteria. Annual Review of Genetics, 25, 147171.
  • van der Meer JR, Eggen RIL, Zehnder AJB, De Vos WM (1991) Sequence analysis of the Pseudomonas sp. strain P51 tcb gene cluster, which encodes metabolism of chlorinated catechols: evidence for specialization of catechol, 1,2-dioxygenases for chlorinated substrates, Journal of Bacteriology, 173, 24252434.
  • van der Meer JR, De Vos WM, Harayama S., Zehnder AJB (1992) Molecular mechanisms of genetic adaptation to xenobiotic compounds. Microbiological Reviews, 56, 677694.
  • Nakatsu C., Ng J., Singh R., Straus N., Wyndham C. (1991) Chlorobenzoate catabolic transposon Tn5271 is a composite class I element with flanking class II insertion sequences. Proceedings of the National Academy of Sciences of the USA, 88, 83128316.
  • Nakatsu CH, Wyndham RC (1993) Cloning and expression of the transposable chlorobenzoate-3, 4-dioxygenase genes of Alcaligenes sp. strain BR60. Applied and Environmental Microbiology, 59, 36253633.
  • Nakatsu CH, Straus NA, Wyndham RC (1995) The nucleotide sequence of the Tn5271 3-chlorobenzoate, 3,4-dioxygenase genes (cbaAB) unites the class IA oxygenases in a single lineage. Microbiology (UK), 141, 485495.
  • Olsen GJ, Woese CR, Overbeek R. (1994) The winds of (evolutionary) change: Breathing new life into microbiology. Journal of Bacteriology, 176, 16.
  • Orser CS, Lange CC, Xun L., Zahrt TC, Schneider BJ (1993a) Cloning, sequence analysis and expression of the Flavobacterium pentachlorophenol-4-monooxygenase gene in Escherichia coli. Journal of Bacteriology, 175, 411416.
  • Orser CS, Dutton J., Lange C., Jablonski P., Xun L., Hargis M. (1993b) Characterization of a Flavobacterium glutathione-S-transferase gene involved in reductive dechlorination. Journal of Bacteriology, 175, 26402644.
  • Palleroni NJ (1984) Family I. Pseudomonadaceae. In: Bergey's Manual of Systematic Bacteriology, Vol. I (eds KriegNR et al), pp. 141219. Williams & Wilkins, Baltimore .
  • Ramos-Gonzalez M-I, Duque E., Ramos JL (1991) Conjugational transfer of recombinant DNA in cultures and in soils: Host range of Pseudomonas putida TOL plasmids. Applied and Environmental Microbiology, 57, 30203027.
  • Reineke W., Knackmuss H-J (1988) Microbial degradation of haloaromatics. Annual Reviews of Microbiology, 42, 263287.
  • Ripp S., Ogunseitan OA, Miller RV (1994) Transduction of a freshwater microbial community by a new Pseudomonas aeruginosa generalized transducing phage, UT1. Molecular Ecology, 3, 121126.
  • Salyers AA, Shoemaker NB (1994) Broad host range gene transfer plasmids and conjugative transposons. FEMS Microbiology Ecology, 15, 1522.
  • Sayler GS, Hooper SW, Layton AC, Henry King JM (1990) Catabolic plasmids of environmental and ecological significance. Microbial Ecology, 19, 120.
  • Schlömann M. (1994) Evolution of chlorocatechol catabolic pathways. Biodegradation, 5, 301321.
  • Smibert RM, Krieg NR (1994) Phenotypie characterization. In: Methods for General and Molecular Bacteriology (eds GerhardtP., MurrayRGE, WoodWA, KriegNR), pp. 607654. American Society for Microbiology Press, Washington , DC .
  • Smith CA, Pinkney M., Guiney DG, Thomas CM (1993) The ancestral IncP replication system consisted of contiguous oriV and trfA segments as deduced from a comparison of the nucleotide sequences of diverse IncP plasmids. Journal of General Microbiology, 139, 17611766.
  • Stanier RY, Palleroni NJ, Duodoroff M. (1966) The aerobic Pseudomonads: a taxonomic study. Journal of General Microbiology, 43, 159271.
  • Stanier RY, Ornston LN (1973) The β-ketoadipate pathway. Advances in Microbial Physiology, 9, 89151.
  • Top EM, Holben WE, Forney LJ (1995) Characterization of diverse, 2,4-dichlorophenoxyacetic acid-degradative plasmids isolated from soil by complementation. Applied and Environmental Microbiology, 61, 16911698.
  • Tschäpe H. (1994) The spread of plasmids as a function of bacterial adaptability. FEMS Microbiology Ecology, 15, 2332.
  • Veal DA, Stokes HW, Daggard G. (1992) Genetic exchange in natural microbial communities. In: Advances in Microbial Ecology, Vol. 12 (ed. MarshallKC), pp. 383430. Plenum Press, NY .
  • Wagner M., Amann R., Lemmer H., Schleifer K-H (1993) Probing activated sludge with oligonucleotides specific for Proteobacteria: inadequacy of culture-dependent methods for describing microbial community structure. Applied and Environmental Microbiology, 59, 15201525.
  • Wallner G., Erhart R., Amann R. (1995) Flow cytometric analysis of activated sludge with rRNA-targeted probes. Applied and Environmental Microbiology, 61, 18591866.
  • Wheelis ML, Palleroni NJ, Stanier RY (1967) The metabolism of aromatic acids by Pseudomonas testosteroni and P. acidovorans. Archives of Microbiology, 59, 302314.
  • Willems A., De Ley J., Gillis M., Kersters K. (1991) Comamona-daceae, a new family encompassing the acidovorans rRNA complex, including Variovorax paradoxus gen. nov., comb, nov., for Alcaligenes paradoxus (Davis 1969). International Journal of Systematic Bacteriology, 41, 445450.
  • Wyndham RC (1986) Evolved aniline catabolism in Acinetobacter calcoaceticus during continuous culture of river water. Applied and Environmental Microbiology, 51, 781789.
  • Wyndham RC, Singh RK, Straus NA (1988) Catabolic instability, plasmid gene deletion and recombination in Alcaligenes sp. BR60. Archives of Microbiology, 150, 237243.
  • Wyndham RC, Nakatsu C., Peel M., Cashore A., Ng J., Szilagyi F. (1994a) Distribution of the catabolic transposon Tn5271 in a groundwater bioremediation system. Applied and Environmental Microbiology, 60, 8693.
  • Wyndham RC, Cashore AE, Nakatsu CH, Peel MC (1994b) Catabolic Transposons. Biodegradation, 5, 323342.