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Table S1 Extent of the regions analysed Fig. S1 Nucleotide polymorphisms at the FAH1 gene region in four populations of Arabidopsis lyrata (KM, MJ, NC and ID, from top to bottom). Nucleotide positions are numbered from the 5? to the 3? end of the amplified fragment. Shaded boxes indicate exons. A dot indicates the same nucleotide as in the first individual, except at heterozygous positions where both variants are shown separated by a slash. n, nonsynonymous; d, deletion. Arabidopsis thaliana (AF068574) information at the polymorphic sites is also included in the alignment. Fig. S2 Nucleotide polymorphisms at the DFR gene region in 4 populations of Arabidopsis lyrata (KM, MJ, NC and ID, from top to bottom). Nucleotide positions are numbered from the 5? to the 3? end of the amplified fragment. Shaded boxes indicate exons, and lines above exon boxes indicate polymorphisms in the same codon. A dot indicates the same nucleotide as in the first individual, except at heterozygous positions where both variants are shown separated by a slash. n, nonsynonymous; d, deletion; *, singleton; 3, trialellic polymorphism. Arabidopsis thaliana (AJ251982) information at the polymorphic sites is also included in the alignment.

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