SEARCH

SEARCH BY CITATION

References

  • Ajmone-Marsan P, Negrini R, Milanesi E et al . (2002) Genetic distances within and across cattle breeds as indicated by biallelic AFLP markers. Animal Genetics, 33, 280286.
  • Akey JM, Eberle MA, Rieder MJ et al . (2004) Population history and natural selection shape patterns of genetic variation in 132 genes. PLoS Biology, 2, 15911599.
  • Albert V, Jonsson B, Bernatchez L (2006) Natural hybrids in Atlantic eels (Anguilla anguilla, A. rostrata): evidence for successful reproduction and fluctuating abundance in space and time. Molecular Ecology, 15, 19031916.
  • Anderson M (2003) pco: A Fortran Computer Program for Principal Coordinate Analysis. Distributed by the Author. University of Auckland, New Zealand.
  • Anderson EC, Thompson EA (2002) A model-based method for identifying species hybrids using multilocus genetic data. Genetics, 160, 12171229.
  • Assunção AG, Pieper B, Vromans J et al . (2006) Construction of a genetic linkage map of Thlaspi caerulescens and quantitative trait loci analysis of zinc accumulation. New Phytologist, 170, 2132.
  • Barbujani G, Oden NL, Sokal R (1989) Detecting regions of abrupt change in maps of biological variables. Systematic Zoology, 38, 376389.
  • Barluenga M, Stolting KN, Salzburger W, Muschick M, Meyer A (2006) Sympatric speciation in Nicaraguan crater lake cichlid fish. Nature, 439, 719723.
  • Beaumont MA, Nichols RA (1996) Evaluating loci for use in the genetic analysis of population structure. Proceedings of the Royal Society of London. Series B, Biological Sciences, 263, 16191626.
  • Bensch S, Akesson M (2005) Ten years of AFLP in ecology and evolution: why so few animals? Molecular Ecology, 14, 28992914.
  • Bensch S, Akesson S, Irwin DE (2002a) The use of AFLP to find an informative SNP: genetic differences across a migratory divide in willow warblers. Molecular Ecology, 11, 23592366.
  • Bensch S, Helbig AJ, Salomon M, Seibold I (2002b) Amplified fragment length polymorphism analysis identifies hybrids between two subspecies of warblers. Molecular Ecology, 11, 473481.
  • Black WC, Baer CF, Antolin MF, DuTeau NM (2001) Population genomics: genome-wide sampling of insect populations. Annual Review of Entomology, 46, 441469.
  • Blears MJ, De Grandis SA, Lee H, Trevors JT (1998) Amplified fragment length polymorphism (AFLP): a review of the procedure and its applications. Journal of Industrial Microbiology and Biotechnology, 21, 99114.
  • Bonin A, Bellemain E, Bronken Eidesen P et al . (2004) How to track and assess genotyping errors in population genetics studies. Molecular Ecology, 13, 32613273.
  • Bonin A, Miaud C, Taberlet P, Pompanon F (2006) Explorative genome scan to detect candidate loci for adaptation along a gradient of altitude in the common frog (Rana temporaria). Molecular Biology and Evolution, 23, 773783.
  • Borowsky RL (2001) Estimating nucleotide diversity from random amplified polymorphic DNA and amplified fragment length polymorphism data. Molecular Phylogenetics and Evolution, 18, 143148.
  • Buerkle CA (2005) Maximum-likelihood estimation of a hybrid index based on molecular markers. Molecular Ecology Notes, 5, 684687.
  • Campbell D, Bernatchez L (2004) Generic scan using AFLP markers as a means to assess the role of directional selection in the divergence of sympatric whitefish ecotypes. Molecular Biology and Evolution, 21, 945956.
  • Campbell D, Duchesne P, Bernatchez L (2003) AFLP utility for population assignment studies: analytical investigation and empirical comparison with microsatellites. Molecular Ecology, 12, 19791991.
  • De Casas RR, Besnard G, Schonswetter P, Balaguer L, Vargas P (2006) Extensive gene flow blurs phylogeographic but not phylogenetic signal in Olea europaea L. Theoretical and Applied Genetics, 113, 575583.
  • Cavers S, Degen B, Caron H et al . (2005) Optimal sampling strategy for estimation of spatial genetic structure in tree populations. Heredity, 95, 281289.
  • Charlesworth B (1998) Measure of divergence between populations and the effect of forces that reduce variability. Molecular Biology and Evolution, 15, 538543.
  • Clark AG, Lanigan CM (1993) Prospects for estimating nucleotide divergence with RAPDs. Molecular Biology and Evolution, 10, 10961111.
  • Congiu L, Dupanloup I, Patarnello T et al . (2001) Identification of interspecific hybrids by amplified fragment length polymorphism: the case of sturgeon. Molecular Ecology, 10, 23552359.
  • Conord C, Lempérière G, Taberlet P, Després L (2006) Genetic structure of the forest pest Hylobius abietis on conifer plantations at different spatial scales in Europe. Heredity, 97, 4655.
  • Corander J, Waldmann P, Silanpää J (2003) Bayesian analysis of genetic differentiation between populations. Genetics, 163, 367374.
  • Corander J, Waldmann P, Marttinen P, Sillanpää M (2004) baps2: enhanced possibilities for the analysis of genetic population structure. Bioinformatics, 20, 23632369.
  • Corander J, Siren J, Arjas E (in press) Bayesian spatial modelling of genetic population structure. Computational Statistics.
  • Crida A, Manel S (in press) wombsoft: a r package that implements the Wombling method to identify genetic boundary. Molecular Ecology Notes.
  • Degen B, Petit R, Kremer A (2001) sgs-Spatial genetic software: a computer program for analysis of spatial genetic and phenotypic structures of individuals and populations. Journal of Heredity, 92, 447448.
  • Després L, Loriot S, Gaudeul M (2002) Geographic pattern of genetic variation in the European globeflower Trollius europaeus L. (Ranunculaceae) inferred from amplified fragment length polymorphism markers. Molecular Ecology, 11, 22372347.
  • Dice LR (1945) Measures of the amount of ecologic association between species. Ecology, 26, 297302.
  • Duarte JM, Dos Santos JB, Melo LC (1999) Comparison of similarity coefficients based on RAPD markers in the common bean. Genetics and Molecular Biology, 22, 427432.
  • Duchesne P, Bernatchez L (2002) aflpop: a computer program for simulated and real populations allocation, based on AFLP data. Molecular Ecology Notes, 2, 380383.
  • Emelianov I, Marec F, Mallet J (2004) Genomic evidence for divergence with gene flow in host races of the larch budmoth. Proceedings of the Royal Society of London. Series B, Biological Sciences, 271, 97105.
  • Epperson B (2003) Geographical Genetics. Princeton University Press, Princeton, New Jersey.
  • Erickson DL, Fenster CB, Stenoien HK, Price D (2004) Quantitative trait locus analyses and the study of evolutionary process. Molecular Ecology, 13, 25052522.
  • Excoffier L, Heckel G (2006) Computer programs for population genetics data analysis: a survival guide. Nature Reviews Genetics, 7, 745758.
  • Excoffier L, Smouse P, Quattro J (1992) Analysis of molecular variance inferred for metric distances among DNA haplotypes: application to human mitochondrial DNA restriction data. Genetics, 131, 479491.
  • Falush D, Stephens M, Pritchard J (2003) Inference of population structure using multilocus genotype data: linked loci and correlated allele frequencies. Genetics, 164, 15671587.
  • Falush D, Stephens M, Pritchard J (in press) Inference of population structure using multilocus genotype data: dominant markers and null alleles. Molecular Ecology Notes.
  • Felsenstein J (2004) phylip (Phylogeny Inference Package). Distributed by the Author. Department of Genome Sciences, University of Washington, Seattle.
  • Foulley JL, Van Schriek MGM, Alderson L et al . (2006) Genetic diversity analysis using lowly polymorphic dominant markers: the example of AFLP in pigs. Journal of Heredity, 97, 244252.
  • François O, Ancelet S, Guillot G (2006) Bayesian clustering using hidden Markov random fields in spatial population genetics. Genetics, 174, 805816.
  • Gardner KM, Latta RG (2006) Identifying loci under selection across contrasting environments in Avena barbata using quantitative trait locus mapping. Molecular Ecology, 15, 13211333.
  • Gaudeul M, Till-Bottraud I, Barjon F, Manel S (2004) Genetic diversity and differentiation in Eryngium alpinum L. (Apiaceae): comparison of AFLP and microsatellite markers. Heredity, 92, 508518.
  • Guillot G, Estoup A, Mortier F, Cosson J (2005) A spatial statistical model for landscape genetics. Genetics, 170, 12611280.
  • Guo YP, Saukel J, Mittermayr R, Ehrendorfer F (2005) AFLP analyses demonstrate genetic divergence, hybridization, and multiple polyploidization in the evolution of Achillea (Asteraceae-Anthemideae). New Phytologist, 166, 273289.
  • Gupta PK, Rustgi S, Kulwal PL (2005) Linkage disequilibrium and association studies in higher plants: present status and future prospects. Plant Molecular Biology, 57, 461485.
  • Van Haeringen WA, Den Bieman MG, Lankhorst AE, Van Lith HA, Van Zutphen LF (2002) Application of AFLP markers for QTL mapping in the rabbit. Genome, 45, 914921.
  • Hansen M, Kraft T, Christiansson M, Nilsson NO (1999) Evaluation of AFLP in Beta. Theoretical and Applied Genetics, 98, 845852.
  • Hardy OJ (2003) Estimation of pairwise relatedness between individuals and characterization of isolation-by-distance processes using dominant genetic markers. Molecular Ecology, 12, 15771588.
  • Hardy OJ, Vekemans X (2002) spagedi: a versatile computer program to analyse spatial genetic structure at the individual or population levels. Molecular Ecology Notes, 2, 618620.
  • Hardy OJ, Maggia L, Bandou E et al . (2006) Fine-scale genetic structure and gene dispersal inferences in 10 Neotropical tree species. Molecular Ecology, 15, 559571.
  • Hawthorne DJ (2001) AFLP-based genetic linkage map of the Colorado potato beetle Leptinotarsa decemlineata: sex chromosomes and a pyrethroid-resistance candidate gene. Genetics, 158, 695700.
  • Helbig AJ, Seibold I, Kocum A et al . (2005) Genetic differentiation and hybridization between greater and lesser spotted eagles (Accipitriformes: Aquila clanga, A. pomarina). Journal of Ornithology, 146, 226234.
  • Hill WG, Weir BS (2004) Moment estimation of population diversity and genetic distance from data on recessive markers. Molecular Ecology, 13, 895908.
  • Hollingsworth PM, Ennos RA (2004) Neighbour-joining trees, dominant markers and population genetic structure. Heredity, 92, 490498.
  • Holsinger K (1999) Analysis of genetic diversity in geographically structured populations: a Bayesian perspective. Hereditas, 130, 245255.
  • Holsinger KE, Lewis PO, Dey DK (2002) A Bayesian approach to inferring population structure from dominant markers. Molecular Ecology, 11, 11571164.
  • Hosmer DW, Lemeshow S (2000) Applied Logistic Regression. John Wiley, New York.
  • Innan H, Terauchi R, Kahl G, Tajima F (1999) A method for estimating nucleotide diversity from AFLP data. Genetics, 151, 11571164.
  • Irwin D, Bensch S, Irwin J, Price T (2005) Speciation by distance in a ring species. Science, 307, 414415.
  • Isabel N, Beaulieu J, Thériault P, Bousquet J (1999) Direct evidence for biased gene diversity estimates from dominant random amplified polymorphic DNA (RAPD) fingerprints. Molecular Ecology, 8, 477483.
  • Jaccard P (1908) Nouvelles recherches sur la distribution florale. Bulletin de la Société Vaudoise Des Sciences Naturelles, 44, 223270.
  • Jaccoud D, Peng K, Feinstein D, Kilian A (2001) Diversity arrays: a solid state technology for sequence information independent genotyping. Nucleic Acids Research, 29, E25.
  • Joost S, Bonin A (in press) Spatial analysis to detect signatures of selection along a gradient of altitude in the common frog (Rana temporaria). Proceedings of the 5th European Colloquium on Theoretical and Quantitative Geography.
  • Joost S, Bonin A, Bruford MW, Després L, Conord C, Erhardt G, Taberlet P (in press) A spatial analysis method (SAM) to detect candidate loci for selection: towards a landscape genomics approach of adaptation. Molecular Ecology.
  • Jump AS, Hunt JM, Martinez-Izquierdo JA, Penuelas J (2006) Natural selection and climate change: temperature-linked spatial and temporal trends in gene frequency in Fagus sylvatica. Molecular Ecology, 15, 34693480.
  • Kis-Papo T, Kirzhner V, Wasser SP, Nevo E (2003) Evolution of genomic diversity and sex at extreme environments: fungal life under hypersaline Dead Sea stress. Proceedings of the National Academy of Sciences, USA, 100, 1497014975.
  • Knowles LL (2004) The burgeoning field of statistical phylogeography. Journal of Evolutionary Biology, 17, 110.
  • Kolliker R, Kraehenbuehl R, Boller B, Widmer F (2006) Genetic diversity and pathogenicity of the grass pathogen Xanthomonas translucens pv. graminis. Systematic and Applied Microbiology, 29, 109119.
  • Koopman WJM (2005) Phylogenetic signal in AFLP data sets. Systematic Biology, 54, 197217.
  • Koopman WJM, Gort G (2004) Significance tests and weighted values for AFLP similarities, based on Arabidopsis in silico AFLP fragment length distributions. Genetics, 167, 19151928.
  • Kosman E (2003) Nei's gene diversity and the index of average differences are identical measures of diversity within populations. Plant Pathology, 52, 533535.
  • Kosman E, Leonard KJ (2005) Similarity coefficients for molecular markers in studies of genetic relationships between individuals for haploid, diploid, and polyploid species. Molecular Ecology, 14, 415424.
  • Krauss SL (2000) Accurate gene diversity estimates from amplified fragment length polymorphism (AFLP) markers. Molecular Ecology, 9, 12411245.
  • Kremer A, Caron H, Cavers S et al . (2005) Monitoring genetic diversity in tropical trees with multilocus dominant markers. Heredity, 95, 274280.
  • Luikart G, England PR, Tallmon D, Jordan S, Taberlet P (2003) The power and promise of population genomics: from genotyping to genome typing. Nature Reviews Genetics, 4, 981994.
  • Lynch M, Milligan BG (1994) Analysis of population genetic structure with RAPD markers. Molecular Ecology, 3, 9199.
  • Mackay TF (2001) The genetic architecture of quantitative traits. Annual Review of Genetics, 303339.
  • Mallet J (2005) Hybridization as an invasion of the genome. Trends in Ecology & Evolution, 20, 229237.
  • Manel S, Dias J, Ormerod S (1999) Alternative methods for predicting species distribution: an illustration with Himalayan river birds. Journal of Applied Ecology, 36, 734747.
  • Manel S, Gaggiotti OE, Waples RS (2005) Assignment methods: matching biological questions with appropriate techniques. Trends in Ecology & Evolution.
  • Manni F, Guerard E, Heyer E (2004) Geographic patterns of genetic, morphologic and linguistic variation: how barriers can be detected by using Monmonier's algorithm. Human Biology, 76, 173190.
  • Mariac C, Robert T, Allinne C et al . (2006) Genetic diversity and gene flow among pearl millet crop/weed complex: a case study. Theoretical and Applied Genetics, 113, 10031014.
  • Mariette S, Chagne D, Lezier C et al . (2001) Genetic diversity within and among Pinus pinaster populations: comparison between AFLP and microsatellite markers. Heredity, 86, 469479.
  • Mariette S, Le Corre V, Austerlitz F, Kremer A (2002) Sampling within the genome for measuring within-population diversity: trade-offs between markers. Molecular Ecology, 11, 11451156.
  • Mba C, Tohme J (2005) Use of AFLP markers in surveys of plant diversity. In: Molecular Evolution: Producing the Biochemical Data, Part B (eds ZimmerEA, RoalsonEH), pp. 177201. Academic Press, San Diego, California.
  • McCullagh P, Nelder J (1989) Generalized Linear Models, 2nd edn. Chapman & Hall, London.
  • McMillan AM, Bagley MJ, Jackson SA, Nacci DE (2006) Genetic diversity and structure of an estuarine fish (Fundulus heteroclitus) indigenous to sites associated with a highly contaminated urban harbor. Ecotoxicology, 15, 539548.
  • Mealor BA, Hild AL (2006) Potential selection in native grass populations by exotic invasion. Molecular Ecology, 15, 22912300.
  • Mechanda SM, Baum BR, Johnson DA, Arnason JT (2004) Sequence assessment of comigrating AFLP™ bands in Echinacea— implications for comparative biological studies. Genome, 47, 1525.
  • Mendelson TC, Shaw KL (2005) Use of AFLP markers in surveys of arthropod diversity. In: Molecular Evolution: Producing the Biochemical Data, Part B (eds ZimmerEA, RoalsonEH), pp. 161177. Academic Press, San Diego, California.
  • Meudt HM, Clarke AC (2007) Almost forgotten or latest practice? AFLP applications, analyses, and advances. Trends in Plant Science, 12, 106117.
  • Miller MP (2005) Allele in space (ais): computer software for the joint analysis of interindividual spatial and genetic information. Journal of Heredity, 96, 722724.
  • Mohammadi SA, Prasanna BM (2003) Analysis of genetic diversity in crop plants – salient statistical tools and considerations. Crop Science, 43, 12351248.
  • Monmonier M (1973) Maximum–difference barriers: an alternative numerical regionalization method. Geographical Analysis, 3, 245261.
  • Mueller UG, Wolfenbarger LL (1999) AFLP genotyping and fingerprinting. Trends in Ecology & Evolution, 14, 389394.
  • Narum SR (2006) Beyond Bonferroni: less conservative analyses for conservation genetics. Conservation Genetics, 7, 783787.
  • Nei M (1973) Analysis of gene diversity in subdivided populations. Proceedings of the National Academy of Sciences, USA, 70, 33213323.
  • Nei M (1978) Estimation of average heterozygosity and genetic distance from a small number of individuals. Genetics, 89, 583590.
  • Nei M (1987) Molecular Evolutionary Genetics. Columbia University Press, New York.
  • Nei M, Li WH (1979) Mathematical model for studying genetic variation in terms of restriction endonucleases. Proceedings of the National Academy of Sciences, USA, 76, 52695273.
  • Nielsen R (2005) Molecular signatures of natural selection. Annual Review of Genetics, 39, 197218.
  • Nybom H (2004) Comparison of different nuclear DNA markers for estimating intraspecific genetic diversity in plants. Molecular Ecology, 13, 11431155.
  • O’Hanlon PC, Peakall R (2000) A simple method for the detection of size homoplasy among amplified fragment length polymorphism fragments. Molecular Ecology, 9, 815816.
  • Paetkau D, Slades R, Burdens M, Estoup A (2004) Genetic assignment methods for the direct, real-time estimation of migration rate: a simulation-based exploration of accuracy and power. Molecular Ecology, 13, 5565.
  • Paun O, Stuessy TF, Horandl E (2006) The role of hybridization, polyploidization and glaciation in the origin and evolution of the apomictic Ranunculus cassubicus complex. New Phytologist, 171, 223236.
  • Peakall R, Smouse PE (2006) genalex 6: genetic analysis in Excel. Population genetic software for teaching and research. Molecular Ecology Notes, 6, 288295.
  • Polyakov A, Beharav A, Avivi A, Nevo E (2004) Mammalian microevolution in action: adaptive edaphic genomic divergence in blind subterranean mole-rats. Proceedings of the Royal Society of London. Series B, Biological Sciences, 271, S156S159.
  • Pompanon F, Bonin A, Bellemain E, Taberlet P (2005) Genotyping errors: causes, consequences and solutions. Nature Reviews Genetics, 6, 847859.
  • Pritchard JK, Stephens M, Donnelly P (2000) Inference of population structure using multilocus genotype data. Genetics, 155, 945959.
  • Prochazka M, Walder K, Xia J (2001) AFLP fingerprinting of the human genome. Human Genetics, 108, 5965.
  • R Development Core Team (2004) A Language and Environment for Statistical Computing. R Foundation for Statistical Computing. Vienna, Austria.
  • Raffl C, Schonswetter P, Erschbamer B (2006) ‘Sax-sess’— genetics of primary succession in a pioneer species on two parallel glacier forelands. Molecular Ecology, 15, 24332440.
  • Reif JC, Melchinger AE, Frisch M (2005) Genetical and mathematical properties of similarity and dissimilarity coefficients applied in plant breeding and seed bank management. Crop Science, 45, 17.
  • Rieseberg LH, Whitton J, Gardner K (1999) Hybrid zones and the genetic architecture of a barrier to gene flow between two sunflower species. Genetics, 152, 713727.
  • Ritland K (2005) Multilocus estimation of pairwise relatedness with dominant markers. Molecular Ecology, 14, 31573165.
  • Rivera-Ocasio E, Aide T, McMillan W (2006) The influence of spatial scale on the genetic structure of widespread tropical wetland tree, Pterocarpus officinalis (Fabaceae). Conservation Genetics, 7, 251266.
  • Rogers SM, Bernatchez L (2005) Integrating QTL mapping and genome scans towards the characterization of candidate loci under parallel selection in the lake whitefish (Coregonus clupeaformis). Molecular Ecology, 14, 351361.
  • Rogers SM, Campbell D, Baird SJE, Danzmann RG, Bernatchez L (2001) Combining the analyses of introgressive hybridisation and linkage mapping to investigate the genetic architecture of population divergence in the lake whitefish (Coregonus clupeaformis, Mitchill). Genetica, 111, 2541.
  • Rogers SM, Isabel N, Bernatchez L (2007) Linkage maps of the dwarf and normal lake whitefish (Coregonus clupeaformis) species complex and their hybrid reveal the genetic architecture of population divergence. Genetics, 175, 375398.
  • Rombauts S (2003) AFLPinSilico, simulating AFLP fingerprints. Bioinformatics, 19, 776777.
  • Rouppe van der Voort JNAM, Van Zandvoort O, Van Eck HJ et al . (1997) Use of allele specificity of comigrating AFLP markers to align genetic maps from different potato genotypes. Molecular Genomics and Genetics, 255, 438447.
  • Rousset F (1997) Genetic differentiation and estimation of gene flow from F-statistics under isolation by distance. Genetics, 145, 12191228.
  • SanCristobal M, Chevalet C, Peleman J et al . (2006) Genetic diversity in European pigs utilizing amplified fragment length polymorphism markers. Animal Genetics, 37, 232238.
  • Savolainen V, Anstett MC, Lexer C et al . (2006) Sympatric speciation in palms on an oceanic island. Nature, 441, 210213.
  • Schonswetter P, Tribsch A (2005) Vicariance and dispersal in the alpine perennial Bupleurum stellatum L. (Apiaceae). Taxon, 54, 725732.
  • Schonswetter P, Tribsch A, Stehlik I, Niklfeld H (2004) Glacial history of high alpine Ranunculus glacialis (Ranunculaceae) in the European Alps in a comparative phylogeographical context. Biological Journal of the Linnean Society, 81, 183195.
  • Scotti-Saintagne C, Mariette S, Porth I et al . (2004) Genome scanning for interspecific differentiation between two closely related oak species [Quercus robur L. and Q. petraea (Matt.) Liebl.]. Genetics, 168, 16151626.
  • Shan F, Clarke HC, Plummer JA, Yan G, Siddique KHM (2005) Geographical patterns of genetic variation in the world collections of wild annual Cicer characterized by amplified fragment length polymorphisms. Theoretical and Applied Genetics, 110, 381391.
  • Shannon CE (1948) A mathematical theory of communication. Bell System Technical Journal, 27, 379423 and 623656.
  • Simmons MP, Zhang LB, Webb CT, Müller K (2007) A penalty of using anonymous dominant markers (AFLPs, ISSRs, and RAPDs) for phylogenetic inference. Molecular Phylogenetics and Evolution, 42, 528542.
  • Singh M, Chabane K, Valkoun J, Blake T (2006) Optimum sample size for estimating gene diversity in wild wheat using AFLP markers. Genetic Resources and Crop Evolution, 53, 2333.
  • Skrede I, Eidesen PB, Portela RP, Brochmann C (2006) Refugia, differentiation and postglacial migration in arctic-alpine Eurasia, exemplified by the mountain avens (Dryas octopetala L.). Molecular Ecology, 15, 18271840.
  • Slate J (2005) Quantitative trait locus mapping in natural populations: progress, caveats and future directions. Molecular Ecology.
  • Sokal RR, Michener CD (1958) A statistical method for evaluating systematic relationships. University of Kansas Science Bulletin, 38, 14091438.
  • Sørensen T (1948) A method of establishing groups of equal amplitude in plant sociology based on similarity of species content and its application to analyses of the vegetation on Danish commons. Kongelige Danske Videnskabernes Selskabs Biologiske Skrifter, 5, 134.
  • Sork VL, Nason J, Campbell DR, Fernandez JF (1999) Landscape approaches to historical and contemporary gene flow in plants. Trends in Ecology & Evolution, 14, 129224.
  • Stewart CN, Excoffier L (1996) Assessing population genetic structure and variability with RADP data: application to Vaccinium macrocarpon (American Cranberry). Journal of Evolutionary Biology, 9, 153171.
  • Storey JD, Tibshirani R (2003) Statistical significance for genomewide studies. Proceedings of the National Academy of Sciences, USA, 100, 94409445.
  • Storz JF (2005) Using genome scans of DNA polymorphism to infer adaptive population divergence. Molecular Ecology, 14, 671688.
  • Tero N, Aspi J, Siikamäki P, Jäkäläniemi A (2005) Local genetic population structure in an endangered plant species, Silene tatarica (Caryophyllaceae). Heredity, 94, 478487.
  • Van de Peer Y, De Wachter R (1994) treecon for windows: a software package for the construction and drawing of evolutionary trees for the Microsoft windows environment. Computational and Applied Biosciences, 10, 569570.
  • Vekemans X, Beauwens T, Lemaire M, Roldan-Ruiz I (2002) Data from amplified fragment length polymorphism (AFLP) markers show indication of size homoplasy and of a relationship between degree of homoplasy and fragment size. Molecular Ecology, 11, 139151.
  • Verhoeven KJ, Vanhala TK, Biere A, Nevo E, Van Damme JM (2004) The genetic basis of adaptive population differentiation: a quantitative trait locus analysis of fitness traits in two wild barley populations from contrasting habitats. Evolution, 58, 270283.
  • Vos P, Hagers R, Bleeker M et al . (1995) AFLP: new technique for DNA fingerprinting. Nucleic Acids Research, 23, 44074414.
  • Wang J (2004) Estimating pairwise relatedness from dominant genetic markers. Molecular Ecology, 13, 31693178.
  • Wang ZS, Baker AJ, Hill GE, Edwards SV (2003) Reconciling actual and inferred population histories in the house finch (Carpodacus mexicanus) by AFLP analysis. Evolution, 57, 28522864.
  • Weir B (1996) Genetic Data Analysis II. Sinauer & Associates, Massachusetts.
  • Weir B, Cockerham C (1984) Estimating F-statistics for the analysis of population structure. Evolution, 38, 13581370.
  • Whitlock MC, McCauley DE (1999) Indirect measure of gene flow and migration. Heredity, 82, 117125.
  • Wilding CS, Butlin RK, Grahame J (2001) Differential gene exchange between parapatric morphs of Littorina saxatilis detected using AFLP markers. Journal of Evolutionary Biology, 14, 611619.
  • Williams JG, Kubelik AR, Livak KJ, Rafalski JA, Tingey SV (1990) DNA polymorphisms amplified by arbitrary primers are useful as genetic markers. Nucleic Acids Research, 18, 65316535.
  • Wolfe AD, Xiang QY, Kephart SR (1998) Assessing hybridization in natural populations of Penstemon (Scrophulariaceae) using hypervariable intersimple sequence repeat (ISSR) bands. Molecular Ecology, 7, 11071125.
  • Womble W (1951) Differential systematics. Science, 28, 315322.
  • Wu B, Liu N, Zhao H (2006) psmix: an r package for population structure inference via maximum likelihood method. BMC Bioinformatics, 7, 317326.
  • Yeh F, Boyle T (1997) Population genetic analysis of co-dominant and dominant markers and quantitative traits. Belgian Journal of Botany, 129, 157.
  • Zhivotovsky L (1999) Estimating population structure in diploids with multilocus dominant DNA markers. Molecular Ecology, 8, 907913.
  • Zietkiewicz E, Rafalski A, Labuda D (1994) Genome fingerprinting by simple sequence repeat (SSR)-anchored polymerase chain reaction amplification. Genomics, 20, 176183.