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  • Alberto F, Correia L, Arnaud-Haond S, Billot C, Duarte CM, Serrão EA (2003a) New microsatellites markers for the endemic Mediterranean seagrass, Posidonia oceanica. Molecular Ecology Notes, 3, 253255.
  • Alberto F, Correia L, Billot C, Duarte CM, Serrao EA (2003b) Isolation and characterization of microsatellite markers for the seagrass, Cymodocea nodosa. Molecular Ecology Notes, 3, 397399.
  • Alberto F, Gouveia L, Arnaud-Haond S, Pérens-Lloréns JL, Duarte CM, Serrão EA (2005) Spatial genetic structure, neighbourhood size and clonal subrange in seagrass (Cymodocea nodosa) populations. Molecular Ecology, 14, 26692681.
  • Anderson JB, Kohn LM (1995) Clonality in soilborne, plant-pathogenic fungi. Annual Review of Phytopathology, 33, 369391.
  • Arnaud-Haond S, Alberto F, Teixeira S, Procaccini G, Serrao EA, Duarte CM (2005) Assessing genetic diversity in clonal organisms: low diversity or low resolution? Combining power and cost-efficiency in selecting markers. Journal of Heredity, 96, 434440.
  • Arnaud-Haond S, Belkhir K (2007) genclone 1.0: a new program to analyse genetics data on clonal organisms. Molecular Ecology Notes, 7, 1517.
  • Arnaud-Haond S, Diaz Almela E, Teixeira S, Alberto F, Duarte CM, Serrao EA (2007) Vicariance patterns in the Mediterranean sea: East-West cleavage and low dispersal in the endemic seagrass Posidonia oceanica. Journal of Biogeography, 34, 963976.
  • Ayre DJ, Hughes TP (2000) Genotypic diversity and gene flow in brooding and spawning corals along the Great Barrier Reef, Australia. Evolution, 54, 15901605.
  • Bastidas C, Benzie JAH, Uthicke S, Fabricius KE (2001) Genetic differentiation among populations of a broadcast spawning soft coral, Sinularia flexibilis, on the Great Barrier Reef. Marine Biology, 138, 517525.
  • Charpentier A (2001) Consequences of clonal growth for plant mating. Evolutionary Ecology, 15, 521530.
  • Cheplick GP (1997) Responses to severe competitive stress in a clonal plant: differences between genotypes. Oikos, 79, 581591.
  • Chung MY, Nason JD, Chung MG (2004) Implications of clonal structure for effective population size and genetic drift in a rare terrestrial orchid, Cremastra appendiculata. Conservation Biology, 18, 15151524.
  • Cywinska A, Hebert PDN (2002) Origins of clonal diversity in the hypervariable asexual ostracode Cypridopsis vidua. Journal of Evolutionary Biology, 15, 134145.
  • Diaz-Almela E, Arnaud-Haond S, Van De Vliet MS et al . Feed-backs between genetic structure and perturbation-driven decline in seagrass (Posidonia oceanica) Meadows Conservation Genetics, doi: 10.1007/s10592-007-9288-0.
  • Dorken ME, Eckert CG (2001) Severely reduced sexual reproduction in northern populations of a clonal plant, Decodon verticillatus (Lythraceae). Journal of Ecology, 89, 339350.
  • Douhovnikoff V, Dodd RS (2003) Intra-clonal variation and a similarity threshold for identification of clones: application to Salix exigua using AFLP molecular markers. Theoretical and Applied Genetics, 106, 13071315.
  • Ellstrand NC, Roose ML (1987) Patterns of genotypic diversity in clonal plant-species. American Journal of Botany, 74, 123131.
  • Epperson BK, Li TQ (1997) Gene dispersal and spatial genetic structure. Evolution, 51, 672681.
  • Fager EW (1972) Diversity: a sampling study. American Naturalist 106, 293310.
  • Freeland JR, Noble LR, Okamura B (2000) Genetic diversity of North American populations of Cristatella mucedo, inferred from microsatellite and mitochondrial DNA. Molecular Ecology, 9, 13751389.
  • Gini C (1912) Variabilità e mutabilità. In: Studi Economico-Giuridici Facolta de Giurisprundenza dell’ Universita di Cagliari, A., Vol III, parte II.
  • Gregorius H-R (2005) Testing for clonal propagation. Heredity, 94, 173179.
  • Van Groenendael J, De Kroon H (1990) Clonal Growth in Plants: Regulation and Function. SPB Academic Publishers, The Hague, The Netherlands.
  • Halkett F, Plantegenest M, Prunier-Leterme N, Mieuzet L, Delmotte F, Simon JC (2005a) Admixed sexual and facultatively asexual aphid lineages at mating sites. Molecular Ecology, 14, 325336.
  • Halkett F, Simon JC, Balloux F (2005b) Tackling the population genetics of clonal and partially clonal organisms. Trends in Ecology & Evolution, 20, 194201.
  • Hammerli A, Reusch TBH (2003) Genetic neighbourhood of clone structures in eelgrass meadows quantified by spatial autocorrelation of microsatellite markers. Heredity, 91, 448455.
  • Hangelbroek HH, Ouborg NJ, Santamaria L, Schwenk K (2002) Clonal diversity and structure within a population of the pondweed Potamogeton pectinatus foraged by Bewick's swans. Molecular Ecology, 11, 21372150.
  • Harada Y, Kawano S, Iwasa Y (1997) Probability of clonal identity: inferring the relative success of sexual versus clonal reproduction from spatial genetic patterns. Journal of Ecology, 85, 591600.
  • Harper JL (1977) Population Biology of Plants. Academic Press, London.
  • Hill MO (1973) Diversity and evenness: a unifying notation and its consequences. Ecology, 54, 427432.
  • Hurlbert SH (1971) The nonconcept of species diversity: a critique and alternative parameters. Ecology, 52, 577586.
  • Kapralov MV (2004) Genotypic variation in populations of the clonal plant Saxifraga cernua in the central and peripheral regions of the species range. Russian Journal of Ecology, 35, 413416.
  • Klekowski EJ (2003) Plant clonality, mutation, diplontic selection and mutational meltdown. Biological Journal of the Linnean Society, 79, 6167.
  • Le Goff-Vitry MC, Pybus OG, Rogers AD (2004) Genetic structure of the deep-sea coral Lophelia pertusa in the northeast Atlantic revealed by microsatellites and internal transcribed spacer sequences. Molecular Ecology, 13, 537549.
  • Leberg PL (2002) Estimating allelic richness: effects of sample size and bottlenecks. Molecular Ecology, 11, 24452449.
  • Loiselle BA, Sork VL, Nason J, Graham C (1995) Spatial genetic structure of a tropical understory shrub, Psychotria officinalis (Rubiaceae). American Journal of Botany, 82, 14201425.
  • Lovett-Doust L (1981) Population dynamics and local specialization in a clonal perrenial (Ranunculus repens). I. The dynamics of ramets in contrasting habitats. Journal of Ecology, 69, 743755.
  • Loxdale HD, Lushai G (2003) Rapid changes in clonal lines: the death of a ‘sacred cow’. Biological Journal of the Linnean Society, 79, 316.
  • Meirmans PG, Van Tienderen PH (2004) genotype and genodive: two programs for the analysis of genetic diversity of asexual organisms. Molecular Ecology Notes, 4, 792794.
  • Murawski DA, Hamrick JL (1990) Local genetic and clonal structure in the tropical terrestrial bromeliad, Aechmea magdalenae. American Journal of Botany, 77, 12011208.
  • Nagamitsu T, Ogawa M, Ishida K, Tanouchi H (2004) Clonal diversity, genetic structure, and mode of recruitment in a Prunus ssiori population established after volcanic eruptions. Plant Ecology, 174, 110.
  • Olsen JL, Stam WT, Coyer JA et al . (2004) North Atlantic phylogeography and large-scale population differentiation of the seagrass Zostera marina L. Molecular Ecology, 13, 19231941.
  • Parker ED Jr (1979) Ecological implications of clonal diversity in parthenogenetic morphospecies. American Zoologist, 19, 753762.
  • Parks JC, Werth CR (1993) A study of spatial features of clones in a population of Bracken fern, Pteridium aquilinum (Dennstaedtiaceae). American Journal of Botany, 80, 537544.
  • Peakall R, Smouse P (2006) genalex 6: genetic analysis in Excel. Population genetic software for teaching and research. Molecular Ecology Notes, 6, 288295.
  • Peet R (1974) The measurement of species diversity. Annual Review of Ecology and Systematics, 5, 285307.
  • Petit RJ, El Mousadik A, Pons O (1998) Identifying populations for conservation on the basis of genetic markers. Conservation Biology, 12, 844855.
  • Pielou EC (1966) Shannon's formulae as a measure of species diversity: its use and misuse. American Naturalist, 100, 463465.
  • Pielou EC (1969) An Introduction to Mathematical Ecology. Wiley-Interscience, New-York.
  • Pielou EC (1975) Ecological diversity. New York, USA, 165pp.
  • Piquot Y, SaumitouLaprade P, Petit D, Vernet P, Epplen JT (1996) Genotypic diversity revealed by allozymes and oligonucleotide DNA fingerprinting in French populations of the aquatic macrophyte, Sparganium erectum. Molecular Ecology, 5, 251258.
  • Reusch TBH (2001) New markers — old questions: population genetics of seagrasses. Marine Ecology — Progress Series, 211, 261274.
  • Reusch TBH, Hukriede W, Stam WT, Olsen JL (1999) Differentiating between clonal growth and limited gene flow using spatial autocorrelation of microsatellites. Heredity, 83, 120126.
  • Ritland K (1996) Estimators for pairwise relatedness and individual inbreeding coefficients. Genetical Research, 67, 175185.
  • Rousset F (2000) Genetic differentiation between individuals. Journal of Evolutionary Biology, 13, 5862.
  • Rozenfeld AF, Arnaud-Haond S, Hernández-García E et al . (2007) Spectrum of genetic diversity and networks of clonal populations Journal of the Royal Society Interface.
  • Schroeder M (1991) Fractals, Chaos, Power Laws: Minutes from an Infinite Paradise. W.H. Freeman, New York.
  • Simpson EH (1949) Measurements of diversity. Nature, 163, 688.
  • Sintes T, Marba N, Duarte CM, Kendrick GA (2005) Nonlinear processes in seagrass colonisation explained by simple clonal growth rules. Oikos, 108, 165175.
  • Smith B, Wilson JB (1996) A consumer's guide to evenness measures Oikos, 76, 7082.
  • Sokal RR, Rohlf FJ (1995) Biometry. W.H. Freeman, New York.
  • StatSoft I (2001) statistica (Data Analysis Software System), Version 6. http://www.statsoft.com .
  • Stenberg P, Lundmark M, Saura A (2003) mlgsim: a program for detecting clones using a simulation approach. Molecular Ecology Notes, 3, 329331.
  • Stoddart JA (1983) A genotypic diversity measure. Journal of Heredity, 74, 489490.
  • Stoddart JA, Taylor JF (1988) Genotypic diversity — estimation and prediction in samples. Genetics, 118, 705711.
  • Suehs CM, Affre L, Medail F (2004) Invasion dynamics of two alien Carpobrotus (Aizoaceae) taxa on a Mediterranean island: I. Genetic diversity and introgression. Heredity, 92, 3140.
  • Taylor DJ, Foighil DO (2000) Transglobal comparisons of nuclear and mitochondrial genetic structure in a marine polyploid clam (Lasaea, Lasaeidae). Heredity, 84, 321330.
  • Tibayrenc M, Ayala FJ (2002) The clonal theory of parasitic protozoa: 12 years on. Trends in Parasitology, 18, 405410.
  • Tibayrenc M, Kjellberg F, Ayala F (1990) A clonal theory of oarasitic protozoa: the population structures of Entamoeba, Giardia, Leishmania, Naegleria, Plasmodium, Trichomonas, and Trypanosoma and their medical and taxonomical consequences. Proceedings of the National Academy of Sciences, USA, 87, 24142418.
  • Ueda HR, Hayashi S, Matsuyama S et al . (2004) Universality and flexibility in gene expression from bacteria to human. Proceedings of the National Academy of Sciences, USA, 101, 37653769.
  • Uthike S, Benzie JAH, Ballment E (1998) Genetic structure of fissiparous populations of Holothuria (Halodeima) atra on the Great Barrier Reef. Marine Biology, 132, 141151.
  • Van der Hulst RGM, Mes THM, Falque M, Stam P, Den Nijs JCM, Bachmann K (2003) Genetic structure of a population sample of apomictic dandelions. Heredity, 90, 326335.
  • Vidondo B, Prairie YT, Blanco JM, Duarte CM (1997) Some aspects of the analysis of size spectra in aquatic ecology. Limnology and Oceanography, 42, 184192.
  • Washington HG (1984) Diversity, biotic and similarity indices. A review with special relevance to aquatic ecosystems. Water Research, 18, 653694.
  • Young AG, Hill JH, Murray BG, Peakall R (2002) Breeding system, genetic diversity and clonal structure in the sub-alpine forb Rutidosis leiolepis F. Muell. (Asteraceae). Biological Conservation, 106, 7178.