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Fig. S1 Haplotype diversity measures for 100 re-sampled rowi data sets of nine individuals each.

Fig. S2 Nucleotide diversity measures for 100 re-sampled rowi data sets of nine individuals each.

Fig. S4 Haplotype diversity measures for 100 re-sampled tokoeka data sets of 26 individuals each.

Fig. S4 Nucleotide diversity measures for 100 re-sampled tokoeka data sets of 26 individuals each.

Table S1 Ancient large kiwi samples that either failed to amplify or only provided partial sequence

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