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Fig. S1 Alignment of the 28 different MHC class II DRB exon 2 amino acid sequences found in this study. Dots indicate identity with the Ruru-DRB01 sequence; stars indicate codons belonging to the putative PBR region, following the structure of the human orthologue (Brown et al. 1993).

Table S1 List of alleles (from GenBank) used in the phylogenetic analysis

Table S2 Number of MHC DRB exon 2 alleles in the 10 populations

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