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Table S1 List of the accessions used for the analysis, indicating: accession code, number of genotypes per accession, population code, local name of landraces or pedigree of varieties and inbred lines, origin (province or region for the North Italy landraces) and collection sites of landraces from Marche region; RL, recent landraces; OL, old landraces; NI, North Italy landraces; FMM, flint modern maize; DMM, dent modern maize

Table S2 List of SSRs used for the analysis; *SSR from Vigouroux et al. (2005)

Table S3 Combined FST (below diagonal) and RST (above diagonal) matrices

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