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Fig. S1 Probability of the data set representing 1..10 clusters [P(D)], as determined by replicate analyses using STRUCTURE 2.2 (Pritchard et al. 2000; Falush et al. 2003) (black points +/− s.d.), and the ad hoc statistic Δk, measuring the steepness of increase of P(D) (Evanno et al. 2005) (red line).

Table S1 Data on the surface areas of potentially trout producing parts of the six studied river systems, along with information on the number of stocked trout from the two hatchery strains HAR (Hårkær) and VOR (Vork).

Table S2 Summary of total number of observed alleles per locus, allele size ranges for the loci, allelic richness (AR) based on the smallest sample size in the data set, i.e. N = 10 for four loci in SNE-40, outcome of tests for deviations from expected Hardy-Weinberg proportions (HWE) with heterozygote excess as alternative hypothesis, expected (He) and observed heterozygosity (Ho), and sample sizes (N) of the studied populations

Table S3 θST between all pairs of samples, along with tests of their significance.

Table S4 Scaled estimates of historical effective population size (ϑ; values in diagonal and denoted by bold) and migration rate between populations (M) along with their 95% confidence intervals, estimated using MIGRATE 2.0.3 (Beerli & Felsenstein 2001).

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Please note: Wiley Blackwell is not responsible for the content or functionality of any supporting information supplied by the authors. Any queries (other than missing content) should be directed to the corresponding author for the article.