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Table S1 Numbers of isolates sampled per country and screened for virulence factors, AFLP and SSR markers

Table S2 List of the 37 Pstl and Msel primer combinations used for the screening test on eight isolates representative of the western Mediterranean region

Table S3 Lengths of polymorphic AFLP bands detected in all Mediterranean samples and their correspondence with data in the study by Hovm?ller et&thinspal. (2008)

Figure S1 Geolocalization of the sampling sites for wheat yellow rust in the western Mediterranean and Middle Eastern regions in 2005 and 2006 via the Google Earth.

Figure S2 Number of PST genotypes detected as a function of the number of loci resampled within the 15 SSR markers, using genclone software.

Figure S3 Plot of Ln likelihood of the data for several K values, the parameter representing the number of populations in the Bayesian clustering algorithm implemented under the structure program.

Figure S4 Factorial Correspondence Analysis (AFC) performed on the Mediterranean genotypes detected using 15 SSR markers.

Figure S5 Randomized distribution and observed values of the length of the most parsimonious tree on SSR data (phylip package).

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