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Table S1 List of collections that provided specimens analysed in this study.

Table S2 Morphological, mitochondrial and nuclear classifications for each location.

Table S3 List of morphological variables used in multivariate analysis with details of the semi-quantitative transformation for qualitative variables.

Table S4 List of individuals sequenced for the CR mitochondrial gene with mitochondrial lineage and corresponding GenBank accession numbers.

Data S5 Protocol of microsatellite amplification.

Table S6P-values of the linkage disequilibrium between the eight microsatellite loci calculated with 1000 permutations for the three morphotypes: hispanicus, liolepis and “type 2”. NS, nonsignificant; *P<0.05; **P<0.01.

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