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Fig. S1 Results from Structure (Pritchard et al. 2000) analysis, based on 12 simulations for each K (K = 1–10) for clonecorrected haplotypes of Aspergillus flavus VCGs OD02, MR17 and CG136. Graphical presentation of the Structure output for one of 12 iterations for K = 3 are shown for (A) 1999, (B) 2000 and (C) 2002. K = 3 was shown to be the most likely number of clusters based on &Dgr;K and ln P(D) estimates (data not shown). Each haplotype is represented as a vertical bar along the x-axis. The estimated proportion of membership (Q) of a haplotype in each of K = 3 inferred genetic clusters is denoted by colour.

Fig. S2 Results from principal coordinates analysis. Samples from each year were analysed separately: (A) 1999 Texas, (B) 2000 Texas and Arizona, and (C) 2002 Arizona. Three genetic clusters are identified for each year of sampling, which correspond to the three VCGs OD02, MR17 and CG136. The per cent of variation explained by the first two axes is 95.60% for 1999, 87.96% for 2000 and 99.74% for 2002.

Table S1 Descriptive statistics for Aspergillus flavus vegetative compatibility groups OD02, MR17 and CG136 in Arizona (AZ) and Texas (TX) based on all loci

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