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References

  • Auer B, Arndt H (2001) Taxonomic composition and biomass of heterotrophic flagellates in relation to lake trophy and season. Freshwater Biology, 46, 959972.
  • Auinger B, Pfandl K, Boenigk J (2008) Improved methodology for identification of protists and microalgae from plankton samples preserved in Lugol’s iodine solution: combining microscopic analysis with single-cell PCR. Applied and Environmental Microbiology, 74, 25052510.
  • Bass D, Cavalier-Smith T (2004) Phylum-specific environmental DNA analysis reveals remarkably high global biodiversity of Cercozoa (Protozoa). International Journal of Systematic and Evolutionary Microbiology, 54, 23932404.
  • Beaver JR, Crisman TL (1989) The role of ciliated protozoa in pelagic freshwater ecosystems. Microbial Ecology, 17, 111136.
  • Behnke A, Bunge J, Barger K et al. (2006) Microeukaryote community patterns along an O-2/H2S gradient in a supersulfidic anoxic Fjord (Framvaren, Norway). Applied and Environmental Microbiology, 72, 36263636.
  • Boenigk J, Arndt H (2002) Bacterivory by heterotrophic flagellates: community structure and feeding strategies. Antonie van Leeuwenhoek, 81, 465480.
  • Boenigk J, Pfandl K, Garstecki T et al. (2006) Evidence for geographic isolation and signs of endemism within a protistan morphospecies. Applied and Environmental Microbiology, 72, 51595164.
  • Caron DA, Dam HG, Kremer P et al. (1995) The contribution of microorganisms to particulate carbon and nitrogen in surface waters of the Sargasso Sea near Bermuda. Deep-Sea Research I, 42, 943972.
  • Caron DA, Worden AZ, Countway PD, Demir E, Heidelberg KB (2009) Protists are microbes too: a perspective. ISME Journal, 3, 412.
  • Cho B, Azam F (1990) Biogeochemical significance of bacterial biomass in the ocean’s euphotic zone. Marine Ecology Progress Series, 63, 253259.
  • Countway PD, Gast RJ, Savai P et al. (2005) Protistan diversity estimates based on 18S rDNA from seawater incubations in the western North Atlantic. Journal of Eukaryotic Microbiology, 52, 95106.
  • Diez B, Pedros-Alio C, Massana R (2001) Study ofgenetic diversity of eukaryotic picoplankton in different oceanic regions by small-subunit rRNA gene cloning and sequencing. Applied and Environmental Microbiology, 67, 29322941.
  • Dyal PL, Hope S, Roberts DM, Embley TM (1995) Use of the PCR and fluorescent-probes to recover SSU ribosomal-RNA sequences from single cells of the ciliate protozoan Sphatitium. Molecular Ecology, 4, 499503.
  • Felip M, Wille A, Sattler B et al. (2002) Microbial communities in the winter cover and the water column of an alpine lake: system connectivity and uncoupling. Aquatic Microbial Ecology, 29, 123134.
  • Fenchel T (1987) Ecology of Protozoa. Springer-Verlag, Berlin.
  • Finlay BJ, Esteban GF (1998) Freshwater protozoa: biodiversity and ecological function. Biodervisity and Conservation, 7, 11631186.
  • Foissner W (1987) Soil protozoa: fundamental problems, ecological significance, adaptations in ciliates and testaceans, bioindicators, and guide to the literature. Progress in Protistology, 2, 69212.
  • Foissner W, Berger H, Schaumburg H (1999) Identification and ecology of limnetic plankton ciliates. Informationsberichte des Bayerischen Landesamtes für Wasserwirtschaft, 3, 1793.
  • Gaedke U, Wickham S (2004) Ciliate dynamics in response to changing biotic and abiotic conditions in a large, deep lake (L Constance). Aquatic Microbial Ecology, 34, 247261.
  • Jeon S, Bunge J, Leslin C et al. (2008) Environmental rRNA inventories miss over half of protistan diversity. BMC Microbiology, 8, 222.
  • Katho K, Asimenos G, Toh H (2009) Multiple alignment of DNA sequences with MAFFT. Methods in Molecular Biology, 537, 3964.
  • Laybourn-Parry J, James M, McKnight D et al. (1997) The microbial plankton of Lake Fryxell, Southern Victoria Land, Antarctica, during the summers of 1992 and 1994. Polar Biology, 17, 5461.
  • Leander BS, Keeling PJ (2003) Morphostasis in alveolate evolution. Trends in Ecology & Evolution, 18, 395402.
  • Massana R, Castresana J, Balagué V et al. (2004) Phylogenetic and ecological analysis of novel marine stramenopiles. Applied and Environmental Microbiology, 70, 35283534.
  • Moreira D, Lopez-Garcia P (2002) The molecular ecology of microbial eukaryotes unveils a hidden world. Trends in Microbiology, 10, 3138.
  • Müller H, Stadler P, Weisse T (2002) Seasonal dynamics of cyst formation of strombidiid ciliates in alpine Lake Mondsee, Austria. Aquatic Microbial Ecology, 29, 181188.
  • Richards TA, Vepritskiy AA, Gouliamova DE et al. (2005) The molecular diversity of freshwater picoeukaryotes from an oligotrophic lake reveals diverse, distinctive and globally dispersed lineages. Environmental Microbiology, 7, 14131425.
  • Savin MC, Martin JL, LeGresley M et al. (2004) Plankton diversity in the Bay of Fundy as measured by morphological and molecular methods. Microbial Ecology, 48, 5165.
  • Schloss PD, Handelsman J (2005) Introducing DOTUR, a computer program for defining operational taxonomic units and estimating species richness. Applied and Environmental Microbiology, 71, 15011506.
  • Sherr EB, Sherr BF (1994) Bacterivory and herbivory: key roles of phagotrophic protists in pelagic food webs. Microbial Ecology, 28, 223235.
  • Šimek K, Bobková J, Macek M et al. (1995) Ciliate grazing on picoplankton in a eutrophic reservoir during the summer phytoplankton maximum: a study at the species and community level. Limnology and Oceanography, 40, 10771090.
  • Sime-Ngando T, Grolière CA (1991) Effets quantitatifs des fixateurs sur le stockage des ciliés d’eaux douces. Archiv für Protistenkunde, 140, 109120.
  • Slapeta J, Moreira D, Lopez-Garcia P (2005) The extent of protist diversity: insights from molecular ecology of freshwater eukaryotes. Proceedings of the Royal Society of London, Series B: Biological Sciences, 272, 20732081.
  • Stoeck T, Epstein S (2003) Novel eukaryotic lineages inferred from small-subunit rRNA analyses of oxygen-depleted marine environments. Applied and Environmental Microbiology, 69, 26572663.
  • Stoeck T, Hayward B, Taylor GT, Varela R, Epstein SS (2006) A multiple PCR-primer approach to access the microeukaryotic diversity in environmental samples. Protist, 157, 3143.
  • Utermöhl H (1958) Zur Vervollkommnung der quantitativen Phytoplankton-Methodik. Mitteilungen. Internationale Vereinigung Für Theoretische und Angewandte Limnologie, 5, 567596.
  • Weitere M, Arndt H (2003) Structure of the heterotrophic flagellate community in the water column of the River Rhine (Germany). European Journal of Protistology, 39, 287300.
  • Zhu F, Massana R, Not F, Marie D, Vaulot D (2005) Mapping of picoeucaryotes in marine ecosystems with quantitative PCR of the 18S rRNA gene. FEMS Microbiology Ecology, 52, 7992.