Present address: Department of Ecology and Evolutionary Biology, University of California Los Angeles, Los Angeles, CA 90095, USA.
Distinguishing between population bottleneck and population subdivision by a Bayesian model choice procedure
Article first published online: 23 AUG 2010
© 2010 Blackwell Publishing Ltd
Volume 19, Issue 21, pages 4648–4660, November 2010
How to Cite
PETER, B. M., WEGMANN, D. and EXCOFFIER, L. (2010), Distinguishing between population bottleneck and population subdivision by a Bayesian model choice procedure. Molecular Ecology, 19: 4648–4660. doi: 10.1111/j.1365-294X.2010.04783.x
- Issue published online: 19 OCT 2010
- Article first published online: 23 AUG 2010
- Received 18 December 2009; revision revised 4 June 2010; accepted 22 June 2010
Table S1 Overall coverage properties of credible intervals for model parameters
Fig. S1 Accuracy of parameter estimations with ABC under the population size change (PSC) model.
Fig. S2 Accuracy of parameter estimations with ABC under a recent finite island (RFI) model.
Fig. S3 Coverage properties of HPD credible intervals over the parameter ranges.
Fig. S4 Accuracy of model assignment using the model choice procedure of Pritchard et al. (1999).
Fig S5 Distribution of the summary statistics for the eastern chimpanzee population.
Fig. S6 Distribution of the summary statistics for the western chimpanzee population.
Fig. S7 Quality of model choice depending on parameter values of the RFI model.
Fig. S8 Quality of model choice for different parameter values of the PSC model.
Fig. S9 Model choice is largely insensitive about the number of demes and the size of the RFI model.
Fig. S10 Outcome of the model choice procedure of Beaumont (2008), based on ten thousands, hundred thousand or 1 million simulations.
Fig. S11 Effect of FIS as summary statistic on model choice accuracy.
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