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Fig. S1 Inference of the number of genetic clusters (K) in Aedes taeniorhynchus populations from Santa Cruz Island, Galapagos using on the one side, Ln P(D), mean (±standard deviation) of log-likelihood values for each value of K (= 1 to = 14, 5 independent runs per K) and, and on the other side, estimates of ΔK, based on the second order rate of change of L(K) with respect to K (Evanno et  al. 2005).

Fig. S2 Clustering of Aedes taeniorhynchus individuals from Santa Cruz Island, Galapagos, with K = 2–5 based on the structure 2.2 algorithm (Pritchard et  al., 2000).

Fig. S3 Clustering of Aedes taeniorhynchus individuals from Santa Cruz Island, Galapagos, based on the newhybrids algorithm (Anderson and Thompson 2002).

Table S1 Summary statistics for 11 microsatellite loci typed in Aedes taeniorhynchus at coastal and highland sites sampled between March 2006 and August 2007 in Santa Cruz Island, Galapagos

Table S2 Genetic differentiation (FST values, lower half) between Aedes taeniorhynchus populations on Santa Cruz Island, Galapagos at different sampling times, 2006–2007

Table S3 Genetic differentiation (FST values, lower half) between Aedes taeniorhynchus populations at Puerto Ayora and Gemelos (Santa Cruz Island, Galapagos) at different sampling times, 2006–2007

Table S4 Estimations of effective population size (θ) and of gene flow between populations of Aedes taeniorhynchus in Santa Cruz Island at different sampling times calculated using migrate

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