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Fig. S1 Genotype-phenotype plots (means  ±  SE) for epistatic QTL pairs affecting behaviour (tonic immobility, rope test), reproduction (egg mean weight) and bone strength (displacement yieldpoint).

Table S1 Trait means  ±  SD N.M. denotes trait not measured in parental types, N.A. denotes not applicable for that sex

Table S2 Markers used in the study, indicating position and information content relative to the cross

Table S3 Significant and suggestive QTL falling outside pleiotropic regions

Table S4 Pearson correlation coefficient values for phenotypic correlations (above diagonal) and degrees of freedom for each pairwise correlation (below diagonal)

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