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Table S1 Observed heterozygosity (Ho), expected heterozygosity (He), and numbers of alleles at 33 microsatellite loci in red foxes from the Sacramento Valley (SV, n = 79) and in the San Joaquin Valley and coastal lowlands (SJV/C, n = 36).

Table S2 Observed (Ho) and expected (He) heterozygosity at 51 SNP loci in red foxes from the Sacramento Valley (SV, n = 64) and in the San Joaquin Valley and coastal lowlands (SJV/C, n = 33).

Figure S1 Average (±SE) log probability of the data [logP(D), bottom] and change in (∆) logP(D) (top) across 5 runs of 10 000 post-burn-in MCMC cycles each in program Structure using no prior information in cluster assignments (Model I).

Figure S2 Posterior probabilities of an 84-locus genotype reflecting various classes of ancestry given a Model II q-value, assuming 90% of individuals are of pure ancestry, 5% are backcrosses, and 5% are F1 or F2 hybrids.

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