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Data S1 Candidate genes.

Fig. S1 Construction of the substitution lines A* and E*.

Fig. S2 Homogenization of maternally inherited factors in A* and E*.

Table S1 Marker information and related accession numbers of sequenced fragments of isofemale fly lines E14 and A157 of D. melanogaster (Glinka et al. 2003; Ometto et al. 2005).

Table S2 Candidate gene list for all six QTL positions.

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