Table S1 Gene Ontology term hierarchy for 124 Tigriopus californicus contigs with dN/dS ≥ 0.5.

Table S2 Mitochondrial-targeting proteins (mTPs) showing elevated divergence (dN/dS ≥ 0.5) between San Diego and Santa Cruz populations of Tigriopus californicus.

Fig. S1 Distribution of amino acid similarity between Tigriopus californicus and 12 arthropod taxa.

Fig. S2 Distributions of Gene Ontology assignments for 12 670 Tigriopus californicus transcripts.

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