SEARCH

SEARCH BY CITATION

References

  • Akaike H (1974) A new look at the statistical model identification. IEEE Transactions on Automatic Control, 19, 716723.
  • Allendorf FW, Luikart G (2007) Conservation and the Genetics of Populations. Blackwell Publishing Ltd, Oxford, 642 pp.
  • Allsen TT (2006) Natural history and cultural history—the circulation of hunting leopards in Eurasia, seventh-seventeenth centuries. In: Contact and Exchange in the Ancient World (ed. MairVT), 310 pp. University of Hawai’i Press, Honolulu.
  • Anderson CR, Lindzey FG, McDonald DB (2004) Genetic structure of cougar populations across the Wyoming basin: metapopulation or megapopulation. Journal of Mammalogy, 85, 12071214.
  • Antunes A, Troyer JL, Roelke ME et al. (2008) The evolutionary dynamics of the lion Panthera leo revealed by host and viral population genomics. PLoS Genetics, 4, e1000251.
  • Bandelt H, Forster P, Rohl A (1999) Median-joining networks for inferring intraspecific phylogenies. Molecular Biology and Evolution, 16, 3748.
  • Belbachir F (2007) Les grands questions relative a la conservation des grands felins d’Algerie: cas du guepard et du leopard. In: Compte-rendu de la deuxième réunion de l’observatoire du guépard en régions d’Afrique du nord—Tamanrasset (ed. OGRAN), 42 pp. Société Zoologique de Paris, Paris.
  • Belkir K, Borsa P, Goudet J, Chikhi L, Bonhomme F (1999) Genetix, logiciel sous Windows TM pour la ge′ne′tique des populations. Laboratoire Ge′nome et Populations, CNRS UPR 9060, Universite′ de Montpellier II, Montpellier, France.
  • Boessneck J, Krauß R (1973) Die Tierwelt um Bas-tam/Nordwest-Azerbaidjan. Archäologische Mitteilungen aus Iran NF, 6, 113133.
  • Bowcock AM, Ruiz-Linares A, Tomfohrde J, Minch E, Kidd JR, Cavalli-Sforza LL (1994) High resolution human evolutionary trees with polymorphic microsatellites. Nature, 368, 455457.
  • Brehm AE (1879) Brehms Thierleben. Allgemeine Kunde des Thierreichs. Verlag des Bibliographischen Instituts, Leipzig.
  • Breitenmoser U, Breitenmoser-Würsten C, von Arx M (2010) Workshop on the conservation of the Asiatic cheetah. Cat News, 52, 17.
  • Burger P, Steinborn R, Walzer C, Petit T, Mueller M, Schwarzenberger F (2004) Analysis of the mitochondrial genome of cheetahs (Acinonyx jubatus) with neurodegenerative disease. Gene, 338, 111119.
  • Busby GBJ, Gottelli D, Wacher T et al. (2009) Genetic analysis of scat reveals leopard Panthera pardus and cheetah Acinonyx jubatus in southern Algeria. Oryx, 43, 412415.
  • CACP (2008) Conservation of the Asiatic Cheetah, Its Natural Habitats and Associated Biota in the I.R. of Iran. Project Number IRA/00/G35. Final Report. CACP, Tehran, Iran, 44 pp.
  • Calabrese PP, Durrett RT, Aquadro CF (2001) Dynamics of microsatellite divergence under stepwise mutation and proportional slippage/point mutation models. Genetics, 159, 839852.
  • Caro T, Laurenson M (1994) Ecological and genetic factors in conservation: a cautionary tale. Science, 263, 485486.
  • Chakraborty R, Nei M (1977) Bottleneck effects on average heterozygosity and genetic distance with the stepwise mutation model. Evolution, 31, 347356.
  • Corander J, Marttinen P (2006) Bayesian identification of admixture events using multilocus molecular markers. Molecular Ecology, 15, 28332843.
  • Corander J, Tang J (2007) Bayesian analysis of population structure based on linked molecular information. Mathematical Biosciences, 205, 1931.
  • Corander J, Marttinen P, Siren J, Tang J (2008) Enhanced Bayesian modelling in BAPS software for learning genetic structures of populations. BMC Bioinformatics, 9, 539.
  • Creel S (2006) Recovery of the Florida panther—genetic rescue, demographic rescue, or both? Animal Conservation, 9, 125126.
  • Culver M, Johnson WE, Pecon-Slattery J, O’Brien SJ (2000) Genomic ancestry of the American puma (Puma concolor). Journal of Heredity, 91, 186197.
  • Dieringer D, Schlötterer C (2003) Microsatellite analyser (MSA): a platform independent analysis tool for large microsatellite data sets. Molecular Ecology Notes, 3, 167169.
  • Divyabhanusinh C (2007) The End of a Trail, 3rd edn. Oxford University Press, Oxford, 307 pp.
  • Driscoll CA, Menotti-Raymond MA, Nelson G, Goldstein D, O’Brien SJ (2002) Genomic microsatellites as evolutionary chronometers: a test in wild cats. Genome Research, 12, 414423.
  • Durant S, Marker L, Purchase N et al. (2008) In: IUCN Red List of Threatened Species: Acinonyx jubatus. Version 2010.1. Available from http://www.iucnredlist.org (accessed 22 March 2010).
  • Eizirik E, Kim JH, Menotti-Raymond M, Crawshaw PG Jr, O’Brien SJ, Johnson WE (2001) Phylogeography, population history and conservation genetics of jaguars (Panthera onca, Mammalia, Felidae). Molecular Ecology, 10, 6579.
  • Ellerman J, Morrison-Scott T (1951) Checklist of Paleartic and Indian Mammals, 1758–1946, 1st edn. British Museum of Natural History, London, 810 pp.
  • Estoup A, Jarne P, Cornuet JM (2002) Homoplasy and mutation model at microsatellite loci and their consequences for population genetics analysis. Molecular Ecology, 11, 15911604.
  • Excoffier L, Lischer H (2010) Arlequin suite ver 3.5: a new series of programs to perform population genetics analyses under Linux and Windows. Molecular Ecology Resources, 10, 564567.
  • Farhadinia M (2004) The last stronghold: cheetah in Iran. Cat News, 40, 1114.
  • Felsenstein J (1985) Confidence-limits on phylogenies with a molecular clock. Systematic Zoology, 34, 152161.
  • Felsenstein J (1989) PHYLIP-phylogeny inference package (version 3.2). Cladistics, 5, 164166.
  • Frankham R, Ballou JD, Briscoe DA (2009) Introduction to Conservation Genetics, 2nd edn. Cambridge University Press, Cambridge, UK, 704 pp.
  • Fraser D, Bernatchez L (2001) Adaptive evolutionary conservation: towards a unified concept for defining conservation units. Molecular Ecology, 10, 27412752.
  • Freeman A, Machugh D, Mckeown S, Walzer C, Mcconnell D, Bradley DG (2001) Sequence variation in the mitochondrial DNA control region of wild African cheetahs (Acinonyx jubatus). Heredity, 86, 355362.
  • Gaggiotti O, Excoffier L (2000) A simple method of removing the effect of a bottleneck and unequal population sizes on pairwise genetic distances. Proceedings of the Royal Society B: Biological Sciences, 267, 8187.
  • Gebremedhin B, Ficetola GF, Naderi S et al. (2009) Frontiers in identifying conservation units: from neutral markers to adaptive genetic variation. Animal Conservation, 12, 107109.
  • Goldstein DB, Pollock DD (1997) Launching microsatellites: a review of mutation processes and methods of phylogenetic interference. Journal of Heredity, 88, 335342.
  • Goldstein DB, Linares AR, Cavalli-Sforza LL, Feldman MW (1995) An evaluation of genetic distances for use with microsatellite loci. Genetics, 139, 463471.
  • Green DM (2005) Designatable units for status assessment of endangered species. Conservation Biology, 19, 18131820.
  • Hasegawa M, Kishino H, Yano T-a (1985) Dating of the human-ape splitting by molecular clock of mitochondrial DNA. Journal of Molecular Evolution, 22, 160174.
  • Hedrick PW (1999) Perspective: highly variable loci and their interpretation in evolution and conservation. Evolution, 53, 313318.
  • Hey J, Nielsen R (2007) Integration within the Felsenstein equation for improved Markov chain Monte Carlo methods in population genetics. Proceedings of the National Academy of Sciences, USA, 104, 27852790.
  • Hoath R, ed. (2003) Cheetah. In: A Field Guide to the Mammals of Egypt, pp. 104105. The American University in Cairo Press, Cairo.
  • Hunter L, Hamman D (2003) Cheetah. Struik-New Holland, Cape Town, 144 pp.
  • Hunter L, Jowkar H, Ziai H et al. (2007) Conserving the Asiatic Cheetah in Iran: launching the First Radio-Telemetry Study. Cat News, 46, 811.
  • Jobb G, von Haeseler A, Strimmer K (2004) Treefinder: a powerful graphical analysis environment for molecular phylogenetics. BMC Evolutionary Biology, 4, 18.
  • Johnson WE, Godoy J, Palomares F et al. (2004) Phylogenetic and phylogeographic analysis of Iberian lynx populations. Journal of Heredity, 95, 1928.
  • Johnson WE, Eizirik E, Pecon-Slattery J et al. (2006) The Late Miocene radiation of modern Felidae: a genetic assessment. Science, 311, 7377.
  • Johnson WE, Onorato DP, Roelke ME et al. (2010) Genetic restoration of the Florida panther. Science, 329, 16411645.
  • Kolb R (1972) Die Tierknochenfunde vom Takht-i Suleiman in der iranischen Provinz Aserbeidschan (Fundmaterial der Grabung 1969). Doctorate Thesis, Ludwig-Maximilian University, Munich.
  • Kotze A, Ehlers K, Cilliers D, Grobler J (2008) The power of resolution of microsatellite markers and assignment tests to determine the geographic origin of cheetah (Acinonyx jubatus) in Southern Africa. Mammalian Biology, 73, 457462.
  • Krausman P, Morales S (2005) Acinonyx jubatus. Mammalian Species, 771, 16.
  • Krauß R (1975) Tierknochenfunde aus Bastam in Nordwest-Azerbaidjan/Iran. Doctorate Thesis, Ludwig-Maximilian University, Munich.
  • Langella M (1999) Populations 1.2.30: Population genetic software (individuals or population distances, phylogenetic trees). Available from http://bioinformatics.org/~tryphon/populations/ (accessed 15 July 2010).
  • Laurenson M (1994) High juvenile mortality in cheetahs (Acinonyx jubatus) and its consequences for maternal care. Journal of Zoology (London), 234, 387408.
  • Lopez J, Cevario S, O’Brien SJ (1996) Complete nucleotide sequence of the domestic cat (Felis catus) mitochondrial genome and a transposed mtDNA tandem repeat (Numt) in the nuclear genome. Genomics, 33, 229246.
  • Luo SJ, Kim JH, Johnson WE et al. (2004) Phylogeography and genetic ancestry of tigers (Panthera tigris). PLoS Biology, 2, 22752293.
  • Manati AR, Nogge G (2008) Cheetahs in Afghanistan. Cat News, 49, 18.
  • Marker L (2009) International Cheetah (Acinonyx jubatus) Studbook 2007. Cheetah Conservation Fund, Otjiwarongo, Namibia.
  • Marker L, O’Brien SJ (1989) Captive breeding of the cheetah (Acinonyx jubatus) in north-American zoos (1871–1986). Zoo Biology, 8, 316.
  • Marker L, Wilkerson A, Sarno R et al. (2008) Molecular genetic insights on cheetah (Acinonyx jubatus) ecology and conservation in Namibia. Journal of Heredity, 99, 213.
  • Masseti M (2009) Pictorial evidence from medieval Italy of cheetahs and caracals, and their use in hunting. Archives of Natural History, 36, 3747.
  • May RM (1995) Population genetics. The cheetah controversy. Nature, 374, 309310.
  • Menotti-Raymond MA, O’Brien SJ (1993) Dating the genetic bottleneck of the African cheetah. Proceedings of the National Academy of Sciences, USA, 90, 31723176.
  • Menotti-Raymond MA, O’Brien SJ (1995) Evolutionary conservation of ten microsatellite loci in four species of Felidae. Journal of Heredity, 86, 319322.
  • Menotti-Raymond MA, David VA, Lyons LA et al. (1999) A genetic linkage map of microsatellites in the domestic cat (Felis catus). Genomics, 57, 923.
  • Moritz C (1994) Defining ‘evolutionary significant units’ for conservation. Trends in Ecology and Evolution, 9, 373375.
  • Nei M (1987) Molecular Evolutionary Genetics. Columbia University Press, New York, 512 pp.
  • Nei M, Li W (1979) Mathematical model for studying genetic variation in terms of restriction endonucleases. Proceedings of the National Academy of Sciences, USA, 76, 52695273.
  • Nielsen R, Wakeley J (2001) Distinguishing migration from isolation: a Markov chain Monte Carlo approach. Genetics, 158, 885896.
  • Nowell K, Jackson P (1996) Status Survey and Conservation Action Plan—Wild Cats. IUCN, Gland, 384 pp.
  • Nsubuga AM, Robbins MM, Roeder AD, Morin PA, Boesch C, Vigilant L (2004) Factors affecting the amount of genomic DNA extracted from ape faeces and the identification of an improved sample storage method. Molecular Ecology, 13, 20892094.
  • O’Brien SJ, Johnson WE (2005) Big cat genomics. Annual Reviews of Genomics and Human Genetics, 6, 407429.
  • O’Brien SJ, Mayr E (1991) Bureaucratic mischief: recognizing endangered species and subspecies. Science, 251, 11871188.
  • O’Brien SJ, Wildt D, Goldman D, Merril C, Bush M (1983) The cheetah is depauperate in genetic variation. Science, 221, 459462.
  • O’Brien SJ, Wildt D, Bush M et al. (1987) East African cheetahs: evidence for two population bottlenecks? Proceedings of the National Academy of Sciences, USA, 84, 508511.
  • Ohta T, Kimura M (1973) A model of mutation appropriate to estimate the number of electrophoretically detectable alleles in a genetic population. Genetical Research, 22, 201204.
  • Osborn DJ, Helmy I (1980) The Contemporary Land Mammals of Egypt (Including Sinai). Field Museum of Natural History, Chicago, IL, 579 pp.
  • Paetkau D, Waits LP, Clarkson PL, Craighead L, Strobeck C (1997) An empirical evaluation of genetic distance satistics using microsatellite data from bear (Ursidae) populations. Genetics, 147, 19431957.
  • Pfeiffer I, Volkel I, Taubert H, Brenig B (2004) Forensic DNA-typing of dog hair: DNA-extraction and PCR amplification. Forensic Science International, 141, 149151.
  • Pimm SL, Dollar L, Bass OL Jr (2006) The genetic rescue of the Florida panther. Animal Conservation, 9, 115122.
  • Piry S, Luikart G, Cornuet J-M (1999) BOTTLENCK: a computer program for detecting recent reductions in the effective population size using allele frequency data. Journal of Heredity, 90, 502503.
  • Pocock RI (1939) The Fauna of British India, Including Ceylon and Burma. Taylor and Francis, London, 549 pp.
  • Posada D, Crandall KA (1998) Modeltest: testing the model of DNA substitution. Bioinformatics, 14, 817818.
  • Pruvost M, Geigl E-M (2004) Real-time quantitative PCR to assess the authenticity of ancient DNA amplification. Journal of Archaeological Science, 31, 11911197.
  • Pruvost M, Grange T, Geigl E-M (2005) Minimizing DNA contamination by using UNG-coupled quantitative real-time PCR on degraded DNA samples: application to ancient DNA studies. BioTechniques, 38, 569575.
  • Pruvost M, Schwarz R, Correia VB et al. (2007) Freshly excavated fossil bones are best for amplification of ancient DNA. Proceedings of the National Academy of Sciences, USA, 104, 739744.
  • R Development Core Team (2009) R: A Language and Environment for Statistical Computing. R.2.10.1. R Foundation for statistical computing, Vienna.
  • Rambaut A (2009) FigTree v1.3.1. Institute of Evolutionary Biology, University of Edinburgh, Edinburgh.
  • Ranjitsinh MK, Jhala YV (2010) Assessing the Potential for Reintroducing the Cheetah in India. Wildlife Trust of India, Noida, & Wildlife Institute of India TR2010/001, Dehradun, India, 177 pp.
  • Raymond M, Rousset F (1995) An exact test for population differentiation. Evolution, 49, 12801283.
  • Rooney AP, Honeycutt RL, Davis SK, Derr JN (1999) Evaluating a putative bottleneck in a population of bowhead whales from patterns of microsatellite diversity and genetic disequilibria. Journal of Molecular Evolution, 49, 682690.
  • Ruiz-Garcia M, Payán E, Murillo A, Alvarez D (2006) DNA microsatellite characterization of the jaguar (Panthera onca) in Colombia. Genes & Genetic System, 81, 1527.
  • Saleh MA, Helmy I, Giegengack R (2001) The cheetah, Acinonyx jubatus (Schreber, 1776) in Egypt (Felidae, Acinonychinae). Mammalia, 65, 177194.
  • Schmidt HA, Petzold E, Vingrom M, von Haeseler A (2003) Molecular phylogenetics: parallelized parameter estimation and quartet puzzling. Journal of Parallel and Distributed Computing, 63, 719727.
  • Shriver MD, Jin L, Boerwinkle E, Deka R, Chakraborty R (1995) A novel measure of genetic distance for highly polymorphic tandem repeat loci. Molecular Biology and Evolution, 12, 914920.
  • Spong G, Johansson M, Björklund M (2000) High genetic variation in leopards indicates large and long-term stable effective population size. Molecular Ecology, 9, 17731782.
  • Tajima F (1983) Evolutionary relationship of DNA sequences in finite populations. Genetics, 105, 437460.
  • Tamura K, Nei M (1993) Estimation of the number of nucleotide substitutions in the control region of mitochondrial DNA in humans and chimpanzees. Molecular Biology and Evolution, 10, 512526.
  • Tamura K, Dudley J, Nei M, Kumar S (2007) MEGA4: molecular evolutionary genetics analysis (MEGA) software version 4.0. Molecular Biology and Evolution, 24, 15961599.
  • Uphyrkina O, Johnson WE, Quigley H et al. (2001) Phylogenetics, genome diversity and origin of modern leopard, Panthera pardus. Molecular Ecology, 10, 26172633.
  • Vasan S, Zhang X, Kapurniotu A et al. (1996) An agent cleaving glucose-derived protein crosslinks in vitro and in vivo. Nature, 382, 275278.
  • Wakeley J, Hey J (1997) Estimating ancestral population parameters. Genetics, 145, 847855.
  • Wisely S, Maldonado J, Fleischer R (2004) A technique for sampling ancient DNA that minimizes damage to museum specimens. Conservation Genetics, 5, 105107.
  • Won Y, Young CR, Lutz RA, Vrijenhoek RC (2003) Dispersal barriers and isolation among deep-sea mussel populations (Mytilidae: Bathymodiolus) from eastern Pacific hydrothermal vents. Molecular Ecology, 12, 169184.
  • Zhivotovsky LA (2001) Estimating divergence time with the use of microsatellite genetic distances: impacts of population growth and gene flow. Molecular Biology and Evolution, 18, 700709.