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Fig. S1 COI consensus trees of Colias behrii and relatives using (A) maximum likelihood and (B) maximum parsimony methods.

Fig. S2 EF1α consensus trees of Colias behrii and relatives using maximum likelihood.

Fig. S3 EF1α consensus tree of Colias behrii and relatives using maximum parsimony.

Fig. S4 WG consensus trees of Colias behrii and relatives using (A) maximum likelihood and (B) maximum parsimony methods.

Fig. S5 Marginal likelihood curves of locus specific migration rates in an isolation with migration model with growth, in the divergence of Colias meadii and Colias behrii.

Table S1 Specimen localities, GenBank accession numbers, and the copy number of each sequence.

Table S2 Results for summary statistic tests at each sampling site of Colias behrii.

Table S3 Bayes factor analysis of tree model prior for (A) COI gene and (B) EF1α gene in BEAST relaxed clock dating analysis.

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