Present address: Biological Chemistry Department, Rothamsted Research, Harpenden AL5 2JQ, UK.
An exceptionally high nucleotide and haplotype diversity and a signature of positive selection for the eIF4E resistance gene in barley are revealed by allele mining and phylogenetic analyses of natural populations
Article first published online: 2 AUG 2011
© 2011 Blackwell Publishing Ltd
Volume 20, Issue 17, pages 3653–3668, September 2011
How to Cite
HOFINGER, B. J., RUSSELL, J. R., BASS, C. G., BALDWIN, T., Dos REIS, M., HEDLEY, P. E., LI, Y., MACAULAY, M., WAUGH, R., HAMMOND-KOSACK, K. E. and KANYUKA, K. (2011), An exceptionally high nucleotide and haplotype diversity and a signature of positive selection for the eIF4E resistance gene in barley are revealed by allele mining and phylogenetic analyses of natural populations. Molecular Ecology, 20: 3653–3668. doi: 10.1111/j.1365-294X.2011.05201.x
- Issue published online: 24 AUG 2011
- Article first published online: 2 AUG 2011
- Received 11 March 2010; revision received 26 May 2011; accepted 6 June 2011
Fig. S1 A phylogenetic relationship tree of 70 barley accessions based on genome-wide genotyping data at 383 SNP sites.
Fig. S2 Genetic diversity index (GD; Weir 1996*) along barley chromosomes (1H to 7H) using a rolling average of 10 adjacent SNPs for each geographic region and overall.
Fig. S3 Genome-level frequency differences (Δf) between alternate character states for 384 SNP loci in 70 barley accession sampled from different geographic regions.
Table S1 Complete list of barley accessions from the Rothamsted Barley Diversity (RBD) collection analysed in this study.
Table S2 Significant regional differentiation of eIF4E haplotypes: pairwise FST values between barley populations.
Table S3 The eIF4E and MCT-1 haplotype diversity in a subset of 192 accessions from different geographical regions.
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