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A conserved haplotype controls parallel adaptation in geographically distant salmonid populations

  1. MICHAEL R. MILLER1,
  2. JOSEPH P. BRUNELLI2,
  3. PAUL A. WHEELER2,
  4. SIXIN LIU3,
  5. CAIRD E. REXROAD III3,
  6. YNIV PALTI3,
  7. CHRIS Q. DOE1,
  8. GARY H. THORGAARD2

Article first published online: 11 OCT 2011

DOI: 10.1111/j.1365-294X.2011.05305.x

Issue

Molecular Ecology

Molecular Ecology

Volume 21, Issue 2, pages 237–249, January 2012

Additional Information

How to Cite

MILLER, M. R., BRUNELLI, J. P., WHEELER, P. A., LIU, S., REXROAD, C. E., PALTI, Y., DOE, C. Q. and THORGAARD, G. H. (2012), A conserved haplotype controls parallel adaptation in geographically distant salmonid populations. Molecular Ecology, 21: 237–249. doi: 10.1111/j.1365-294X.2011.05305.x

Author Information

  1. 1

    Institute of Molecular Biology and Howard Hughes Medical Institute, University of Oregon, Eugene, OR 97403, USA

  2. 2

    School of Biological Sciences and Center for Reproductive Biology, Washington State University, Pullman, WA 99164, USA

  3. 3

    National Center for Cool and Cold Water Aquaculture, Agricultural Research Service-USDA, Kearneysville, WV 25430, USA

*Michael R. Miller, Fax: +1-541-346-5891; E-mail: miller.michael.ryan@gmail.com

Publication History

  1. Issue published online: 4 JAN 2012
  2. Article first published online: 11 OCT 2011
  3. Received 5 July 2011; revision received 29 August 2011; accepted 1 September 2011

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Fig. S1 The entire WR × Sw (WS) genetic map.

Appendix S1 DNA sequences of the 40649 RAD tag loci. Sequences include the 8 bp SbfI site plus 60 bp of flanking sequence. Each locus is either not polymorphic or has a SNP allele shared by Cl and Sw (Cl/SW), Cl and WR (Cl/WR), or Sw and WR (Sw/WR).

Appendix S2 Genotypes and phenotypes of the doubled haploid progeny.

Appendix S3 Genetic map positions of the 4563 mapped RAD tag markers.

Appendix S4 Genetic map positions of the 63 PCR-based markers.

Appendix S5 Genomic distribution of the Cl/Sw and Cl/WR SNPs.

Protocol S1 RAD library construction protocol.

FilenameFormatSizeDescription
MEC_5305_sm_Figure-S1.pdf34KSupporting info item
MEC_5305_sm_Appendix-S1.xls7300KSupporting info item
MEC_5305_sm_Appendix-S2.xls7645KSupporting info item
MEC_5305_sm_Appendix-S3.xls343KSupporting info item
MEC_5305_sm_Appendix-S4.xls16KSupporting info item
MEC_5305_sm_Appendix-S5.xls36KSupporting info item
MEC_5305_sm_Protocol-S1.pdf107KSupporting info item

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