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Table S1 Summary of markers used for genotyping for (a) four Rhinolophus species and (b) three Kerivoula species.

Fig. S1 Separation of Kerivoula lenis and K. papillosa based on Bayesian clustering of multi-locus genotypes for K = 2.

Fig. S2 Genetic autocorrelation combined over sites and loci for increasing distance classes undertaken for seven species.

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