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Fig. S1 Geographical localities in the Caribbean from which samples of Montastraea annularis were collected (numbered yellow circles) and associated map of derived polygon boundaries divided into sub-regions.

Fig. S2 Isolation by distance analysis of Montastraea annularis field data using Nei’s genetic distance (DA).

Fig. S3 Geographical subdivision of Caribbean sampling locations of Montastraea annularis as inferred using hierarchical structure analysis for: (a) empirical genetic data; (b) genetic projection model data.

Table S1 Characteristics of Montastraea annularis microsatellite markers in the 26 sampling locations.

Table S2 Mean membership (q) of each Montastraea annularis sampling location belonging to the respective clusters and sub-clusters identified by structure analysis for: (a) empirical genetic data—all sampling locations, K = 3; (b) empirical genetic data—cluster A, K = 2; (c) empirical genetic data—cluster B, K = 2; (d) genetic projection data—all sampling locations, K = 3; (e) genetic projection data—cluster A, K = 5; (f) genetic projection data— cluster B, K = 2; (g) genetic projection data—cluster C, K = 4.

Table S3 Biological parameters of the bio-oceanographic larval connectivity model. N denotes number of particles released per reef polygon.

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