Table S1 Microsatellite primers.

Table S2 Genetic diversity and multilocus linkage disequilibrium in the simulated populations.

Fig. S1 Worldwide distribution of mating types and female fertility in a non-populational collection of M.  oryzae strains from rice (samples collected at the continental scale).

Fig. S2 Relationship between G:N and the number of scored loci in the different populations.

Fig. S3 Pairwise linkage disequilibrium in five populations.

Fig. S4 Pairwise linkage disequilibrium between two consecutive years in the CH1 population.

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