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Fig S1 Rarefaction curves for Augochlora pura samples.

Fig S2 Rarefaction curves for Halictus ligatus samples.

Fig S3 Rarefaction curves for Megalopta genalis social nest samples.

Fig S4 Rarefaction curves for Megalopta genalis solitary nest samples.

Fig S5 Results of BLAST searches of 16S rDNA amplicons against the SILVA database, as visualized in MEGAN4.

Fig S6 Average patristic distance from bee-associated lactobacilli to flower-associated lactobacilli and from bee-associated lactobacilli to all other lactobacilli, excluding flower-associated lactobacilli. Error bars are 95% confidence intervals.

Fig S7 Natural log of the proportional abundance of the ten most commonly observed bacterial phylotypes from four sweat bee nests.

Table S1 Halictus ligatus. Percent abundance of phylotypes per sample according to BLAST matches at >96% for species, 94% > 96% for genus, 89% > 94% for family, 85% > 89% for order, 80% > 85% for class and 77% > 80% for phylum.

Table S2Augochlora pura. Percent abundance of phylotypes per sample according to BLAST matches at >96% for species, 94% > 96% for genus, 89% > 94% for family, 85% > 89% for order, 80% > 85% for class and 77% > 80% for phylum.

Table S3 Megalopta genalis social nest. Percent abundance of phylotypes per sample according to BLAST matches at >96% for species, 94% > 96% for genus, 89% > 94% for family, 85% > 89% for order, 80% > 85% for class and 77% > 80% for phylum.

Table S4 Megalopta genalis solitary nest. Percent abundance of phylotypes per sample according to BLAST matches at >96% for species, 94% > 96% for genus, 89% > 94% for family, 85% > 89% for order, 80% > 85% for class and 77% > 80% for phylum.

Table S5 Within genome variation of 16S copies.

Data S1Alignment of 16S rDNA from lactobacilli. Sequences were both obtained from NCBI GenBank and generated for this study.

Data S2Alignment of 16S rDNA from sweat bee-associated bacteria, used in FastTree and Fast UniFrac analyses.

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