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Table S1 Gene list of newly annotated genes.

Table S2 Analysis of Molecular Function (MF) and Biological Process (BP) Gene Ontology Terms of genes that exhibit a significant Line effect.

Table S3 Analysis of Molecular Function (MF) and Biological Process (BP) Gene Ontology Terms of genes that exhibit a significant Line×Cactus effect.

Fig. S1 Numbers of third instar larvae collected from agria and organpipe necroses for each of the nine isofemale lines used.

Fig. S2 The numbers of expected and observed genes that are significantly modulated by cactus host for A) detoxification genes (Gst, P450, UGT) and B) odorant and gustatory receptors.

Fig. S3 Transcriptional modulation of GI22738 a gene with significant Cactus and Cactus×Line effect. The mean expression intensity (log2) and standard error for each isofemale line is shown. Note, for clarity the axis range is different from Fig. 3 in the text.

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