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Table S1 Genomic positions and quantitative trait locus linked to microsatellite markers used in this study.

Table S2 Correlations between individual colour traits in the 34 males from the red and black pools.

Table S3 Contribution (weights) of individual colour traits to covariances between shape and colour, using partial least squares.

Fig. S1 Distribution of colour phenotypes in 508 Enos Lake males collected in 2006 and 2007.

Fig. S2 Body shape of males from the red and black pools relative to all 508 males collected.

Fig. S3 Biplot of covariance among colour traits in relationship to shape.

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